Wall clock time and date at job start Sun Mar 29 2020 22:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00420 * 2 1 4 4 H 1.48497 * 109.47404 * 240.00283 * 3 2 1 5 5 H 1.48506 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47381 * 119.99944 * 3 2 1 7 7 C 1.37885 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46899 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99673 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.80500 * 305.70226 * 14 13 12 16 16 C 1.54812 * 110.90806 * 182.07381 * 14 13 12 17 17 C 1.54092 * 104.18880 * 220.92459 * 16 14 13 18 18 O 1.43747 * 107.29632 * 357.96691 * 17 16 14 19 19 C 1.44425 * 106.99764 * 26.48885 * 18 17 16 20 20 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47453 * 60.00011 * 9 7 2 22 22 H 1.09002 * 109.47376 * 300.00413 * 9 7 2 23 23 H 1.08993 * 109.47042 * 60.00237 * 10 9 7 24 24 H 1.08995 * 109.46589 * 299.99477 * 10 9 7 25 25 H 1.00895 * 111.00497 * 56.03863 * 11 10 9 26 26 H 1.09001 * 109.47062 * 59.99745 * 12 11 10 27 27 H 1.08993 * 109.47084 * 299.99192 * 12 11 10 28 28 H 1.09001 * 109.46801 * 300.00064 * 13 12 11 29 29 H 1.09001 * 109.46998 * 59.99660 * 13 12 11 30 30 H 1.08998 * 110.48604 * 339.59909 * 16 14 13 31 31 H 1.08994 * 110.48432 * 102.24284 * 16 14 13 32 32 H 1.08998 * 109.88286 * 117.39770 * 17 16 14 33 33 H 1.09000 * 109.88021 * 238.54796 * 17 16 14 34 34 H 1.08998 * 110.65185 * 201.47588 * 19 18 17 35 35 H 1.09007 * 110.59382 * 78.47117 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5105 -4.9343 -0.0012 12 6 2.4350 -6.0760 -0.0018 13 6 1.6348 -7.3801 -0.0018 14 6 2.5976 -8.5692 -0.0031 15 1 3.3027 -8.4955 -0.8310 16 6 1.8221 -9.9080 -0.0554 17 6 2.5825 -10.8235 0.9233 18 8 3.7019 -10.0751 1.4265 19 6 3.3439 -8.6780 1.3510 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5568 -0.8902 22 1 0.6245 -2.5571 0.8896 23 1 2.8717 -3.6045 0.8894 24 1 2.8716 -3.6044 -0.8906 25 1 0.8743 -4.9842 -0.7826 26 1 3.0630 -6.0354 0.8882 27 1 3.0628 -6.0346 -0.8918 28 1 1.0072 -7.4213 0.8885 29 1 1.0064 -7.4209 -0.8915 30 1 0.7934 -9.7662 0.2759 31 1 1.8456 -10.3233 -1.0629 32 1 1.9284 -11.1106 1.7466 33 1 2.9359 -11.7125 0.4008 34 1 4.2363 -8.0521 1.3489 35 1 2.6849 -8.4059 2.1755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220875422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:36 Heat of formation + Delta-G solvation = -92.511817 kcal Electronic energy + Delta-G solvation = -13817.984973 eV Core-core repulsion = 11427.941772 eV Total energy + Delta-G solvation = -2390.043201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42606 -37.80773 -35.51701 -34.31025 -31.86357 -30.43525 -28.16139 -25.88212 -24.08328 -22.58107 -22.48536 -21.20369 -18.51138 -17.62280 -16.88762 -16.68131 -16.52381 -16.04106 -15.37059 -14.95413 -14.92379 -14.30842 -14.10144 -13.76986 -13.26186 -12.96664 -12.81175 -12.54753 -12.45573 -12.40380 -12.06159 -11.81782 -11.61470 -11.40774 -11.38691 -11.15120 -10.63188 -10.56428 -9.29577 -8.20794 -6.32618 1.40511 1.43895 1.51868 2.40517 2.97960 3.12518 3.35392 3.59660 3.84901 4.03041 4.20612 4.24157 4.32279 4.42485 4.51702 4.60376 4.65424 4.74406 4.86467 4.87253 4.88521 5.04061 5.04994 5.09959 5.21748 5.37664 5.44263 5.66497 5.77952 5.92505 6.13365 6.27429 6.55012 6.84533 7.36729 8.91241 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.087454 B = 0.004080 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.090839 B = 6860.956626 C = 7048.708463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.700 5.700 12 C 0.057 3.943 13 C -0.096 4.096 14 C -0.115 4.115 15 H 0.086 0.914 16 C -0.148 4.148 17 C 0.040 3.960 18 O -0.406 6.406 19 C 0.046 3.954 20 H 0.264 0.736 21 H -0.008 1.008 22 H -0.006 1.006 23 H 0.057 0.943 24 H 0.018 0.982 25 H 0.339 0.661 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 -18.958 -0.744 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.331 5.331 12 C -0.072 4.072 13 C -0.134 4.134 14 C -0.134 4.134 15 H 0.104 0.896 16 C -0.186 4.186 17 C -0.036 4.036 18 O -0.326 6.326 19 C -0.031 4.031 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.013 0.987 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.157 0.843 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.506 -18.954 0.024 19.482 hybrid contribution 0.243 1.152 -0.922 1.495 sum 4.749 -17.801 -0.898 18.446 Atomic orbital electron populations 1.70098 1.07846 1.27928 1.51283 1.25992 0.95793 1.03429 0.94547 0.85460 0.78240 0.77873 0.79219 1.19084 1.20739 1.19157 1.21603 0.93561 0.92316 1.51167 0.92147 1.18932 0.94341 0.92328 0.95094 1.21778 0.95601 0.88550 0.98683 1.60507 1.20541 1.01946 1.50114 1.22048 0.94611 0.90191 1.00353 1.21437 0.97394 0.91414 1.03121 1.22660 0.97620 0.94799 0.98305 0.89584 1.22996 1.00212 0.94157 1.01187 1.23328 0.88030 0.95556 0.96735 1.88836 1.39725 1.18332 1.85712 1.23759 1.00115 0.82447 0.96730 0.92684 0.98952 0.98739 0.92473 0.96349 0.84323 0.91445 0.95314 0.91176 0.90948 0.89723 0.89211 0.91823 0.88802 0.88875 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.65 5.23 29.85 0.16 1.81 16 10 C 0.08 3.53 5.62 86.30 0.49 4.02 16 11 N -0.70 -24.63 6.50 -513.89 -3.34 -27.97 16 12 C 0.06 1.53 5.56 86.31 0.48 2.01 16 13 C -0.10 -2.00 4.87 30.60 0.15 -1.85 16 14 C -0.11 -2.07 3.12 -9.49 -0.03 -2.10 16 15 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 16 C -0.15 -2.17 6.60 31.58 0.21 -1.97 16 17 C 0.04 0.65 7.70 72.35 0.56 1.21 16 18 O -0.41 -9.25 11.52 -148.98 -1.72 -10.96 16 19 C 0.05 0.93 6.49 72.66 0.47 1.40 16 20 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 21 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 22 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 23 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 25 H 0.34 11.47 8.73 -89.70 -0.78 10.69 16 26 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.15 7.86 -2.39 -0.02 1.13 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.84 8.11 -2.39 -0.02 1.82 16 35 H 0.06 1.28 7.98 -2.38 -0.02 1.26 16 Total: -1.00 -65.35 287.71 0.68 -64.67 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.26 Total: 11.26 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 3.17 Total: -26.43 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.06 Total: -84.98 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.72 Total: -10.96 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.35 0.68 -64.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220875422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.847 kcal (2) G-P(sol) polarization free energy of solvation -65.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds