Wall clock time and date at job start Sun Mar 29 2020 22:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00106 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.46955 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46792 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.45223 * 52.40103 * 14 13 12 16 16 C 1.54510 * 110.50734 * 175.00100 * 14 13 12 17 17 C 1.54473 * 104.06293 * 118.64823 * 16 14 13 18 18 O 1.44429 * 104.80279 * 23.97511 * 17 16 14 19 19 C 1.44419 * 105.27374 * 319.48945 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 24 24 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 25 25 H 1.00900 * 110.99562 * 303.94873 * 11 10 9 26 26 H 1.08999 * 109.46866 * 299.99546 * 12 11 10 27 27 H 1.09000 * 109.47056 * 59.99263 * 12 11 10 28 28 H 1.08999 * 109.47273 * 299.99677 * 13 12 11 29 29 H 1.09000 * 109.47530 * 59.99933 * 13 12 11 30 30 H 1.09000 * 110.50928 * 237.29246 * 16 14 13 31 31 H 1.08997 * 110.51423 * 359.97438 * 16 14 13 32 32 H 1.09000 * 110.37630 * 142.80421 * 17 16 14 33 33 H 1.08997 * 110.37653 * 265.14573 * 17 16 14 34 34 H 1.09005 * 110.37634 * 281.67869 * 19 18 17 35 35 H 1.09002 * 110.37225 * 159.34376 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 2.4350 -6.0760 -0.0212 13 6 1.6348 -7.3800 -0.0271 14 6 2.5977 -8.5691 -0.0324 15 1 3.3216 -8.4766 0.7773 16 6 1.8179 -9.8976 0.0877 17 6 2.1578 -10.6516 -1.2169 18 8 3.4201 -10.0962 -1.6460 19 6 3.3164 -8.6777 -1.3954 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8718 -3.6005 -0.9002 24 1 2.8717 -3.6084 0.8798 25 1 0.8739 -4.9880 0.7641 26 1 3.0636 -6.0310 -0.9105 27 1 3.0623 -6.0389 0.8694 28 1 1.0064 -7.4248 0.8624 29 1 1.0072 -7.4172 -0.9175 30 1 2.1580 -10.4630 0.9553 31 1 0.7466 -9.7072 0.1513 32 1 2.2596 -11.7193 -1.0227 33 1 1.3896 -10.4735 -1.9694 34 1 2.7258 -8.1967 -2.1752 35 1 4.3081 -8.2289 -1.3382 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220875478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:39 Heat of formation + Delta-G solvation = -71.263501 kcal Electronic energy + Delta-G solvation = -13837.306440 eV Core-core repulsion = 11448.184635 eV Total energy + Delta-G solvation = -2389.121805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.63861 -36.40075 -33.96232 -32.65422 -30.51702 -29.12297 -26.83985 -24.11705 -23.16896 -21.65346 -20.75554 -20.11248 -16.67414 -16.30915 -15.81514 -15.76703 -15.11320 -14.49010 -14.19020 -13.65301 -13.54272 -13.06861 -12.66019 -12.20718 -11.97155 -11.65505 -11.59365 -11.06419 -11.01795 -10.89749 -10.78130 -10.54721 -10.46275 -9.98397 -9.93271 -9.36607 -9.12917 -8.35789 -7.83142 -6.00065 -4.02587 3.31158 3.38448 3.42647 3.81940 4.34590 4.44156 4.53877 4.67536 4.87174 5.06968 5.11682 5.27269 5.32466 5.36015 5.48939 5.54253 5.64711 5.71336 5.74953 5.81892 5.91015 6.16672 6.25705 6.34132 6.43390 6.63339 6.97558 7.47564 7.72547 7.82630 7.95619 8.08097 8.43494 9.04911 9.61265 11.11457 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.085628 B = 0.004106 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.916940 B = 6818.198542 C = 6980.636366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.693 5.693 12 C 0.056 3.944 13 C -0.108 4.108 14 C -0.120 4.120 15 H 0.081 0.919 16 C -0.152 4.152 17 C 0.044 3.956 18 O -0.381 6.381 19 C 0.047 3.953 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.025 0.975 23 H 0.058 0.942 24 H 0.015 0.985 25 H 0.335 0.665 26 H 0.067 0.933 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -18.408 0.221 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.073 4.073 13 C -0.146 4.146 14 C -0.140 4.140 15 H 0.100 0.900 16 C -0.190 4.190 17 C -0.033 4.033 18 O -0.299 6.299 19 C -0.029 4.029 20 H 0.070 0.930 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.076 0.924 24 H 0.033 0.967 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.519 -18.400 -0.562 18.742 hybrid contribution 0.565 1.136 1.069 1.660 sum 4.084 -17.264 0.508 17.747 Atomic orbital electron populations 1.69987 1.06044 1.26484 1.50756 1.25013 0.94854 0.99258 0.95299 0.86524 0.80075 0.83732 0.77588 1.19761 1.20949 1.21027 1.21225 0.93032 0.91022 1.50744 0.92702 1.19081 0.94047 0.90489 0.97715 1.22158 0.96978 0.88533 0.98606 1.60604 1.19861 1.02206 1.49712 1.21963 0.94804 0.90522 1.00049 1.21650 0.97531 0.92580 1.02876 1.22547 0.97976 0.94897 0.98559 0.90009 1.23013 1.01287 0.96018 0.98633 1.23402 0.86506 0.98519 0.94858 1.89104 1.34998 1.20546 1.85292 1.23584 1.01418 0.82324 0.95588 0.93041 0.96820 0.95634 0.92387 0.96703 0.84775 0.91475 0.95975 0.91748 0.90824 0.90844 0.90205 0.89403 0.92268 0.91654 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 10 C 0.07 1.40 5.62 -3.83 -0.02 1.38 16 11 N -0.69 -12.41 6.50 -113.78 -0.74 -13.15 16 12 C 0.06 0.80 5.56 -3.82 -0.02 0.78 16 13 C -0.11 -1.23 4.69 -26.73 -0.13 -1.36 16 14 C -0.12 -1.21 3.11 -89.05 -0.28 -1.48 16 15 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.15 -1.31 6.74 -25.17 -0.17 -1.48 16 17 C 0.04 0.40 7.63 37.93 0.29 0.69 16 18 O -0.38 -4.56 11.65 -35.23 -0.41 -4.97 16 19 C 0.05 0.51 6.51 37.93 0.25 0.76 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.34 5.75 8.73 -39.29 -0.34 5.41 16 26 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 7.74 -51.93 -0.40 0.31 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -30.82 287.38 -7.89 -38.71 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.15 Total: -1.34 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.64 Total: -13.96 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.00 Total: -39.53 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.41 Total: -4.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.82 -7.89 -38.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220875478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.558 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds