Wall clock time and date at job start Sun Mar 29 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99485 * 2 1 4 4 H 1.48501 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47497 * 299.99855 * 3 2 1 6 6 H 1.48499 * 109.47515 * 60.00396 * 3 2 1 7 7 C 1.37869 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46799 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99836 * 170.00316 * 11 10 9 13 13 C 1.53001 * 109.47084 * 196.52186 * 12 11 10 14 14 O 1.42897 * 109.47370 * 60.26792 * 13 12 11 15 15 C 1.46899 * 110.99996 * 293.95131 * 11 10 9 16 16 C 1.53785 * 113.61510 * 153.34859 * 15 11 10 17 17 C 1.53775 * 87.17523 * 139.94133 * 16 15 11 18 18 C 1.53782 * 113.61827 * 250.84471 * 15 11 10 19 19 H 0.96996 * 120.00841 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46866 * 59.99623 * 9 7 2 21 21 H 1.08998 * 109.47206 * 300.00182 * 9 7 2 22 22 H 1.08997 * 109.46991 * 60.00364 * 10 9 7 23 23 H 1.09003 * 109.47341 * 299.99814 * 10 9 7 24 24 H 1.09004 * 109.46825 * 316.51917 * 12 11 10 25 25 H 1.08998 * 109.47321 * 76.51813 * 12 11 10 26 26 H 1.09001 * 109.46983 * 180.26917 * 13 12 11 27 27 H 1.09005 * 109.46682 * 300.26713 * 13 12 11 28 28 H 0.96699 * 114.00246 * 179.97438 * 14 13 12 29 29 H 1.09000 * 112.84767 * 22.15778 * 15 11 10 30 30 H 1.09003 * 113.61342 * 254.53440 * 16 15 11 31 31 H 1.09004 * 113.61237 * 25.34491 * 16 15 11 32 32 H 1.08998 * 113.61517 * 89.15550 * 17 16 15 33 33 H 1.08994 * 113.61534 * 220.06672 * 17 16 15 34 34 H 1.08997 * 113.61166 * 334.57421 * 18 15 11 35 35 H 1.08998 * 113.61293 * 105.38749 * 18 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5110 -4.9342 -0.0024 12 6 2.4175 -6.0652 -0.2418 13 6 1.6021 -7.2962 -0.6429 14 8 0.8730 -7.0154 -1.8394 15 6 0.7662 -5.1127 1.2511 16 6 -0.4758 -6.0081 1.1075 17 6 -0.1018 -6.6151 2.4700 18 6 1.3499 -6.2034 2.1646 19 1 -0.4851 0.8399 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8728 -3.6046 0.8877 23 1 2.8715 -3.6038 -0.8923 24 1 3.1110 -5.8117 -1.0436 25 1 2.9774 -6.2810 0.6682 26 1 2.2743 -8.1366 -0.8158 27 1 0.9053 -7.5468 0.1569 28 1 0.3327 -7.7535 -2.1531 29 1 0.5689 -4.1713 1.7638 30 1 -1.4157 -5.4560 1.1186 31 1 -0.4106 -6.7160 0.2812 32 1 -0.5365 -6.0859 3.3179 33 1 -0.2488 -7.6938 2.5225 34 1 1.9149 -6.9657 1.6283 35 1 1.8852 -5.8091 3.0283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221167501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:01 Heat of formation + Delta-G solvation = -16.449684 kcal Electronic energy + Delta-G solvation = -14877.657043 eV Core-core repulsion = 12490.912143 eV Total energy + Delta-G solvation = -2386.744900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.77068 -36.27075 -34.85031 -32.82159 -30.35422 -27.80581 -25.42442 -24.82938 -23.56997 -21.16898 -20.22933 -18.93724 -17.40616 -16.41048 -15.65660 -15.26688 -14.46100 -14.34652 -13.74234 -13.51535 -13.00008 -12.75019 -12.27397 -12.06160 -12.00801 -11.37676 -11.04172 -10.96661 -10.82056 -10.53276 -10.41311 -10.22922 -9.92208 -9.74072 -9.52795 -9.24409 -9.03423 -8.28065 -7.50051 -5.94116 -3.96273 3.34316 3.41496 3.45613 4.36084 4.49215 4.60003 4.92606 4.96415 5.16217 5.31675 5.33909 5.41574 5.42354 5.59841 5.76117 5.88186 5.98511 6.02996 6.10572 6.12352 6.34384 6.38519 6.48173 6.60166 6.75008 7.06449 7.62888 7.70284 7.84858 7.92941 7.99399 8.18691 8.50217 9.11508 9.66935 11.17244 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039747 B = 0.007251 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.283366 B = 3860.701837 C = 4111.928952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.062 3.938 11 N -0.515 5.515 12 C 0.048 3.952 13 C 0.069 3.931 14 O -0.550 6.550 15 C 0.066 3.934 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.185 4.185 19 H 0.259 0.741 20 H 0.025 0.975 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.366 0.634 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -15.291 2.509 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.064 4.064 11 N -0.237 5.237 12 C -0.081 4.081 13 C -0.009 4.009 14 O -0.353 6.353 15 C -0.043 4.043 16 C -0.175 4.175 17 C -0.179 4.179 18 C -0.223 4.223 19 H 0.069 0.931 20 H 0.044 0.956 21 H 0.034 0.966 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.210 0.790 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.485 -14.549 2.172 14.785 hybrid contribution 0.781 0.396 0.659 1.096 sum 2.266 -14.153 2.831 14.610 Atomic orbital electron populations 1.69986 1.05988 1.26357 1.50856 1.24993 0.94823 0.99128 0.95421 0.86556 0.80080 0.83930 0.77536 1.19819 1.21001 1.21087 1.21249 0.92992 0.91129 1.50550 0.92809 1.19095 0.93932 0.90013 0.97770 1.22351 0.96730 0.88676 0.98666 1.62048 1.27045 1.01897 1.32704 1.22246 0.94496 0.91603 0.99734 1.22552 0.94452 0.96156 0.87732 1.86719 1.64069 1.42033 1.42506 1.23284 0.94624 0.97391 0.89029 1.23307 0.98654 0.99156 0.96383 1.22735 0.96832 0.99942 0.98424 1.23851 0.97026 1.00898 1.00565 0.93119 0.95645 0.96610 0.96434 0.92248 0.90859 0.93075 0.94687 0.92473 0.78964 0.87665 0.91676 0.89192 0.90432 0.92068 0.89244 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 10 C 0.06 1.39 4.84 -3.82 -0.02 1.37 16 11 N -0.51 -9.89 4.43 -225.67 -1.00 -10.89 16 12 C 0.05 0.74 4.93 -3.82 -0.02 0.72 16 13 C 0.07 0.89 5.84 37.16 0.22 1.11 16 14 O -0.55 -7.99 13.21 -35.23 -0.47 -8.45 16 15 C 0.07 1.16 3.71 -66.90 -0.25 0.91 16 16 C -0.14 -2.08 7.28 -25.92 -0.19 -2.26 16 17 C -0.14 -1.78 7.95 -25.83 -0.21 -1.99 16 18 C -0.18 -2.55 6.36 -25.83 -0.16 -2.72 16 19 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 20 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.02 0.44 6.42 -51.93 -0.33 0.11 16 22 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 23 H 0.06 1.32 7.86 -51.93 -0.41 0.92 16 24 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 25 H 0.05 0.72 5.81 -51.93 -0.30 0.42 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.70 3.93 -51.93 -0.20 0.49 16 28 H 0.37 3.41 9.12 45.56 0.42 3.82 16 29 H 0.11 2.12 6.18 -51.93 -0.32 1.80 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.31 4.95 -51.93 -0.26 1.05 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.12 4.25 -51.93 -0.22 0.90 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 271.54 15.07 4.09 4.09 Total: -1.00 -32.39 271.54 -7.37 -39.76 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.53 Total: 1.24 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.18 Total: -16.09 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.26 Total: -37.61 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.47 Total: -8.45 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.39 -7.37 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221167501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.307 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds