Wall clock time and date at job start Sun Mar 29 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99485 * 2 1 4 4 H 1.48501 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47497 * 299.99855 * 3 2 1 6 6 H 1.48499 * 109.47515 * 60.00396 * 3 2 1 7 7 C 1.37869 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46799 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99836 * 170.00316 * 11 10 9 13 13 C 1.53001 * 109.47084 * 196.52186 * 12 11 10 14 14 O 1.42897 * 109.47370 * 60.26792 * 13 12 11 15 15 C 1.46899 * 110.99996 * 293.95131 * 11 10 9 16 16 C 1.53785 * 113.61510 * 153.34859 * 15 11 10 17 17 C 1.53775 * 87.17523 * 139.94133 * 16 15 11 18 18 C 1.53782 * 113.61827 * 250.84471 * 15 11 10 19 19 H 0.96996 * 120.00841 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46866 * 59.99623 * 9 7 2 21 21 H 1.08998 * 109.47206 * 300.00182 * 9 7 2 22 22 H 1.08997 * 109.46991 * 60.00364 * 10 9 7 23 23 H 1.09003 * 109.47341 * 299.99814 * 10 9 7 24 24 H 1.09004 * 109.46825 * 316.51917 * 12 11 10 25 25 H 1.08998 * 109.47321 * 76.51813 * 12 11 10 26 26 H 1.09001 * 109.46983 * 180.26917 * 13 12 11 27 27 H 1.09005 * 109.46682 * 300.26713 * 13 12 11 28 28 H 0.96699 * 114.00246 * 179.97438 * 14 13 12 29 29 H 1.09000 * 112.84767 * 22.15778 * 15 11 10 30 30 H 1.09003 * 113.61342 * 254.53440 * 16 15 11 31 31 H 1.09004 * 113.61237 * 25.34491 * 16 15 11 32 32 H 1.08998 * 113.61517 * 89.15550 * 17 16 15 33 33 H 1.08994 * 113.61534 * 220.06672 * 17 16 15 34 34 H 1.08997 * 113.61166 * 334.57421 * 18 15 11 35 35 H 1.08998 * 113.61293 * 105.38749 * 18 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5110 -4.9342 -0.0024 12 6 2.4175 -6.0652 -0.2418 13 6 1.6021 -7.2962 -0.6429 14 8 0.8730 -7.0154 -1.8394 15 6 0.7662 -5.1127 1.2511 16 6 -0.4758 -6.0081 1.1075 17 6 -0.1018 -6.6151 2.4700 18 6 1.3499 -6.2034 2.1646 19 1 -0.4851 0.8399 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8728 -3.6046 0.8877 23 1 2.8715 -3.6038 -0.8923 24 1 3.1110 -5.8117 -1.0436 25 1 2.9774 -6.2810 0.6682 26 1 2.2743 -8.1366 -0.8158 27 1 0.9053 -7.5468 0.1569 28 1 0.3327 -7.7535 -2.1531 29 1 0.5689 -4.1713 1.7638 30 1 -1.4157 -5.4560 1.1186 31 1 -0.4106 -6.7160 0.2812 32 1 -0.5365 -6.0859 3.3179 33 1 -0.2488 -7.6938 2.5225 34 1 1.9149 -6.9657 1.6283 35 1 1.8852 -5.8091 3.0283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221167501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:01 Heat of formation + Delta-G solvation = -41.043809 kcal Electronic energy + Delta-G solvation = -14878.723524 eV Core-core repulsion = 12490.912143 eV Total energy + Delta-G solvation = -2387.811381 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04220 -37.33396 -36.48783 -34.84383 -32.08719 -29.40309 -26.61610 -26.49575 -25.18143 -22.54442 -21.92326 -20.20212 -18.60017 -18.47394 -17.02086 -16.66370 -16.47364 -15.56276 -15.14843 -14.91467 -14.39967 -14.23250 -14.08644 -13.46890 -13.33539 -13.15450 -12.88341 -12.56377 -12.31496 -12.09067 -11.92920 -11.57857 -11.36919 -11.29332 -11.21516 -11.04870 -10.59108 -10.49069 -8.95867 -8.20996 -6.33116 1.38193 1.39522 1.52783 2.39093 3.07511 3.11661 3.53289 3.75520 3.82399 3.99751 4.10769 4.24634 4.34289 4.46492 4.56963 4.60966 4.71691 4.79605 4.81310 4.93180 4.97506 5.06220 5.07798 5.22969 5.29316 5.44908 5.53323 5.69514 5.79030 6.14976 6.40121 6.41642 6.84241 7.11418 7.35998 8.91473 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039747 B = 0.007251 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.283366 B = 3860.701837 C = 4111.928952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.079 3.921 11 N -0.532 5.532 12 C 0.040 3.960 13 C 0.073 3.927 14 O -0.582 6.582 15 C 0.044 3.956 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.171 4.171 19 H 0.264 0.736 20 H -0.015 1.015 21 H -0.008 1.008 22 H 0.019 0.981 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.387 0.613 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 -16.711 3.041 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.003 3.997 10 C -0.048 4.048 11 N -0.254 5.254 12 C -0.087 4.087 13 C -0.005 4.005 14 O -0.389 6.389 15 C -0.065 4.065 16 C -0.175 4.175 17 C -0.162 4.162 18 C -0.209 4.209 19 H 0.073 0.927 20 H 0.003 0.997 21 H 0.010 0.990 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.235 0.765 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.632 -16.006 2.705 16.445 hybrid contribution 0.369 0.812 0.465 1.006 sum 3.001 -15.195 3.170 15.809 Atomic orbital electron populations 1.70130 1.07893 1.27722 1.51427 1.26010 0.95795 1.03464 0.94564 0.85339 0.78993 0.78446 0.77883 1.18534 1.20271 1.20133 1.21664 0.93493 0.92324 1.50917 0.92221 1.18888 0.94087 0.92094 0.94602 1.21950 0.95311 0.89106 0.98450 1.62005 1.27699 1.01669 1.34076 1.22442 0.94540 0.91351 1.00382 1.22564 0.94930 0.95384 0.87612 1.86659 1.64879 1.44125 1.43215 1.23350 0.96741 0.97153 0.89226 1.23340 0.96622 0.98809 0.98732 1.22674 0.95270 1.01722 0.96522 1.23797 0.98064 0.99479 0.99584 0.92749 0.99667 0.98966 0.96233 0.92636 0.91808 0.91100 0.91239 0.91414 0.76451 0.91649 0.93444 0.88093 0.90381 0.88828 0.87158 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.01 13.29 21.44 0.28 -58.73 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -32.72 9.11 25.60 0.23 -32.48 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.04 2.33 4.95 29.85 0.15 2.48 16 10 C 0.08 3.65 4.84 86.30 0.42 4.07 16 11 N -0.53 -20.67 4.43 -867.87 -3.84 -24.51 16 12 C 0.04 1.19 4.93 86.30 0.43 1.62 16 13 C 0.07 1.66 5.84 71.98 0.42 2.08 16 14 O -0.58 -15.84 13.21 -148.98 -1.97 -17.81 16 15 C 0.04 1.57 3.71 45.44 0.17 1.74 16 16 C -0.14 -4.06 7.28 31.12 0.23 -3.83 16 17 C -0.12 -2.81 7.95 31.18 0.25 -2.56 16 18 C -0.17 -4.35 6.36 31.18 0.20 -4.15 16 19 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 20 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 21 H -0.01 -0.48 6.42 -2.39 -0.02 -0.50 16 22 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 23 H 0.06 2.54 7.86 -2.39 -0.02 2.53 16 24 H 0.06 1.99 7.80 -2.38 -0.02 1.97 16 25 H 0.07 1.80 5.81 -2.39 -0.01 1.79 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.40 3.93 -2.38 -0.01 1.39 16 28 H 0.39 6.35 9.12 -74.06 -0.68 5.67 16 29 H 0.07 2.81 6.18 -2.39 -0.01 2.79 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.10 2.76 4.95 -2.38 -0.01 2.75 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 2.36 4.25 -2.39 -0.01 2.35 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.29 271.54 -0.15 -72.44 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.40 Total: 11.48 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 2.95 Total: -30.61 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -3.56 Total: -83.24 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.97 Total: -17.81 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.29 -0.15 -72.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221167501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.396 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds