Wall clock time and date at job start Sun Mar 29 2020 22:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48499 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47001 * 300.00051 * 3 2 1 6 6 H 1.48497 * 109.47392 * 59.99750 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47683 * 305.02416 * 13 12 11 15 15 C 1.53085 * 109.48254 * 184.99944 * 13 12 11 16 16 C 1.53184 * 109.16381 * 182.40647 * 15 13 12 17 17 C 1.53181 * 109.03405 * 56.97865 * 16 15 13 18 18 C 1.53087 * 109.16514 * 303.02392 * 17 16 15 19 19 O 1.42900 * 109.42035 * 57.60762 * 18 17 16 20 20 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 27 27 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 28 28 H 1.09003 * 109.52557 * 302.31093 * 15 13 12 29 29 H 1.08992 * 109.52506 * 62.43776 * 15 13 12 30 30 H 1.09000 * 109.54238 * 176.84366 * 16 15 13 31 31 H 1.08995 * 109.54107 * 297.11243 * 16 15 13 32 32 H 1.09000 * 109.52017 * 62.92807 * 17 16 15 33 33 H 1.08994 * 109.52071 * 183.11060 * 17 16 15 34 34 H 1.09001 * 109.48068 * 177.59666 * 18 17 16 35 35 H 1.09009 * 109.47845 * 297.62168 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 6 1.8004 -7.3881 -0.0018 14 1 1.1078 -7.4267 0.8390 15 6 2.8207 -8.5224 0.1247 16 6 2.0887 -9.8665 0.0621 17 6 1.2941 -9.9423 -1.2453 18 6 0.3328 -8.7531 -1.3188 19 8 1.0750 -7.5356 -1.2242 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8403 -3.5488 -0.7819 24 1 0.8798 -4.9817 0.8886 25 1 0.8805 -4.9812 -0.8914 26 1 3.1554 -5.9687 -0.8900 27 1 3.1541 -5.9688 0.8899 28 1 3.5381 -8.4599 -0.6936 29 1 3.3452 -8.4361 1.0762 30 1 2.8146 -10.6789 0.0953 31 1 1.4070 -9.9501 0.9085 32 1 1.9807 -9.9085 -2.0912 33 1 0.7261 -10.8721 -1.2729 34 1 -0.2048 -8.7784 -2.2667 35 1 -0.3792 -8.8098 -0.4953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224000281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:34 Heat of formation + Delta-G solvation = -73.038490 kcal Electronic energy + Delta-G solvation = -14132.787601 eV Core-core repulsion = 11743.588827 eV Total energy + Delta-G solvation = -2389.198774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.44513 -35.64547 -33.67483 -33.10652 -31.83043 -28.83711 -26.19979 -24.49409 -23.05771 -21.31292 -20.86532 -20.23515 -16.46679 -16.28684 -16.03519 -14.79725 -14.73827 -14.62805 -14.29894 -13.79808 -13.35128 -12.79868 -12.72935 -12.21596 -11.94968 -11.71604 -11.32071 -11.23933 -10.98950 -10.83413 -10.65073 -10.58185 -10.42430 -10.23005 -9.79911 -9.39827 -9.07181 -8.43212 -7.19455 -5.98201 -3.99868 3.34402 3.41185 3.46786 3.83026 4.46504 4.60692 4.67187 4.74693 4.87348 5.13793 5.20523 5.36646 5.37605 5.46847 5.53514 5.66140 5.70251 5.73229 5.86437 5.88677 6.00341 6.02289 6.16581 6.26100 6.57908 6.66354 7.31365 7.34763 7.51003 7.84817 8.19460 8.48266 8.69971 9.10153 9.64825 11.13126 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.080300 B = 0.004671 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.609502 B = 5992.386285 C = 6201.543881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.693 5.693 11 C 0.061 3.939 12 C -0.107 4.107 13 C 0.091 3.909 14 H 0.057 0.943 15 C -0.150 4.150 16 C -0.123 4.123 17 C -0.156 4.156 18 C 0.059 3.941 19 O -0.374 6.374 20 H 0.260 0.740 21 H -0.014 1.014 22 H 0.027 0.973 23 H 0.327 0.673 24 H 0.059 0.941 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -19.172 -0.948 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.323 5.323 11 C -0.069 4.069 12 C -0.145 4.145 13 C 0.033 3.967 14 H 0.075 0.925 15 C -0.188 4.188 16 C -0.160 4.160 17 C -0.194 4.194 18 C -0.018 4.018 19 O -0.293 6.293 20 H 0.070 0.930 21 H 0.004 0.996 22 H 0.045 0.955 23 H 0.143 0.857 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.720 -18.889 -0.398 19.088 hybrid contribution -0.043 0.605 -0.695 0.922 sum 2.677 -18.284 -1.092 18.511 Atomic orbital electron populations 1.69986 1.06099 1.26591 1.51166 1.25007 0.94880 0.99382 0.95429 0.86424 0.80065 0.83348 0.77464 1.19648 1.21111 1.21018 1.21257 0.93560 0.90305 1.49987 0.91911 1.19551 0.90672 0.87447 0.95747 1.60699 1.21307 1.01499 1.48799 1.21814 0.95259 0.89832 0.99978 1.21617 0.98318 0.91720 1.02863 1.22161 0.92650 0.94995 0.86864 0.92505 1.22214 0.98887 0.94778 1.02895 1.21593 0.99300 0.97580 0.97556 1.22194 0.99556 0.99001 0.98648 1.22525 0.93087 0.84252 1.01891 1.88006 1.64316 1.38332 1.38682 0.93021 0.99590 0.95528 0.85671 0.92268 0.95591 0.91578 0.90015 0.91081 0.90832 0.91713 0.91924 0.91159 0.91233 0.89141 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -15.06 9.32 -34.44 -0.32 -15.38 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.32 5.44 -4.98 -0.03 5.29 16 10 N -0.69 -15.78 6.49 -115.06 -0.75 -16.53 16 11 C 0.06 1.17 5.58 -3.82 -0.02 1.15 16 12 C -0.11 -1.62 5.18 -26.73 -0.14 -1.76 16 13 C 0.09 1.20 2.64 -26.68 -0.07 1.13 16 14 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.15 -1.59 5.42 -26.59 -0.14 -1.73 16 16 C -0.12 -1.11 6.03 -26.54 -0.16 -1.27 16 17 C -0.16 -1.41 6.14 -26.59 -0.16 -1.57 16 18 C 0.06 0.65 6.84 37.20 0.25 0.90 16 19 O -0.37 -5.41 9.94 -35.23 -0.35 -5.76 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.33 7.12 8.72 -39.29 -0.34 6.78 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.03 0.53 7.82 -51.93 -0.41 0.12 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -31.43 285.28 -8.18 -39.62 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.21 Total: -0.15 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.89 Total: -11.74 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.01 Total: -43.40 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.35 Total: -5.76 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.43 -8.18 -39.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224000281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.423 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds