Wall clock time and date at job start Sun Mar 29 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48499 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47001 * 300.00051 * 3 2 1 6 6 H 1.48497 * 109.47392 * 59.99750 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47683 * 305.02416 * 13 12 11 15 15 C 1.53085 * 109.48254 * 184.99944 * 13 12 11 16 16 C 1.53184 * 109.16381 * 182.40647 * 15 13 12 17 17 C 1.53181 * 109.03405 * 56.97865 * 16 15 13 18 18 C 1.53087 * 109.16514 * 303.02392 * 17 16 15 19 19 O 1.42900 * 109.42035 * 57.60762 * 18 17 16 20 20 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 27 27 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 28 28 H 1.09003 * 109.52557 * 302.31093 * 15 13 12 29 29 H 1.08992 * 109.52506 * 62.43776 * 15 13 12 30 30 H 1.09000 * 109.54238 * 176.84366 * 16 15 13 31 31 H 1.08995 * 109.54107 * 297.11243 * 16 15 13 32 32 H 1.09000 * 109.52017 * 62.92807 * 17 16 15 33 33 H 1.08994 * 109.52071 * 183.11060 * 17 16 15 34 34 H 1.09001 * 109.48068 * 177.59666 * 18 17 16 35 35 H 1.09009 * 109.47845 * 297.62168 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 6 1.8004 -7.3881 -0.0018 14 1 1.1078 -7.4267 0.8390 15 6 2.8207 -8.5224 0.1247 16 6 2.0887 -9.8665 0.0621 17 6 1.2941 -9.9423 -1.2453 18 6 0.3328 -8.7531 -1.3188 19 8 1.0750 -7.5356 -1.2242 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8403 -3.5488 -0.7819 24 1 0.8798 -4.9817 0.8886 25 1 0.8805 -4.9812 -0.8914 26 1 3.1554 -5.9687 -0.8900 27 1 3.1541 -5.9688 0.8899 28 1 3.5381 -8.4599 -0.6936 29 1 3.3452 -8.4361 1.0762 30 1 2.8146 -10.6789 0.0953 31 1 1.4070 -9.9501 0.9085 32 1 1.9807 -9.9085 -2.0912 33 1 0.7261 -10.8721 -1.2729 34 1 -0.2048 -8.7784 -2.2667 35 1 -0.3792 -8.8098 -0.4953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224000281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:33 Heat of formation + Delta-G solvation = -94.635772 kcal Electronic energy + Delta-G solvation = -14133.724129 eV Core-core repulsion = 11743.588827 eV Total energy + Delta-G solvation = -2390.135303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40170 -37.40502 -34.97047 -34.52261 -33.41729 -30.28235 -27.98253 -25.60818 -24.35668 -23.23286 -22.20950 -21.08935 -18.55876 -17.50637 -16.99560 -16.68864 -16.24102 -15.66271 -15.47206 -15.01041 -14.88819 -14.31782 -14.03769 -13.64077 -13.52116 -13.12053 -12.82846 -12.64407 -12.41648 -12.22688 -12.10905 -11.94792 -11.77469 -11.55293 -11.31745 -11.09048 -10.67904 -10.31387 -9.15791 -8.23505 -6.35592 1.41499 1.42640 1.57025 2.40223 2.88306 3.09588 3.44673 3.89304 3.94336 3.97102 4.04137 4.19927 4.36511 4.42414 4.49270 4.57721 4.70362 4.80399 4.89414 4.95132 5.00484 5.07017 5.12220 5.16750 5.19972 5.22184 5.31882 5.42137 5.60919 6.00030 6.36217 6.42762 6.70109 6.87415 7.35678 8.88843 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.080300 B = 0.004671 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.609502 B = 5992.386285 C = 6201.543881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.206 3.794 10 N -0.688 5.688 11 C 0.064 3.936 12 C -0.096 4.096 13 C 0.091 3.909 14 H 0.056 0.944 15 C -0.145 4.145 16 C -0.122 4.122 17 C -0.152 4.152 18 C 0.050 3.950 19 O -0.405 6.405 20 H 0.266 0.734 21 H -0.043 1.043 22 H -0.001 1.001 23 H 0.335 0.665 24 H 0.053 0.947 25 H 0.010 0.990 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -19.866 -0.746 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.318 5.318 11 C -0.065 4.065 12 C -0.134 4.134 13 C 0.033 3.967 14 H 0.074 0.926 15 C -0.183 4.183 16 C -0.159 4.159 17 C -0.189 4.189 18 C -0.026 4.026 19 O -0.325 6.325 20 H 0.074 0.926 21 H -0.025 1.025 22 H 0.017 0.983 23 H 0.151 0.849 24 H 0.071 0.929 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.056 -19.616 -0.199 20.032 hybrid contribution -0.524 0.771 -0.771 1.210 sum 3.532 -18.845 -0.970 19.198 Atomic orbital electron populations 1.70118 1.07973 1.28039 1.51518 1.26036 0.95839 1.03649 0.94417 0.85199 0.78906 0.77838 0.77814 1.18470 1.20224 1.20210 1.21594 0.93912 0.91313 1.50706 0.91499 1.19228 0.90753 0.89232 0.93009 1.60606 1.20468 1.01679 1.49079 1.21863 0.96195 0.89592 0.98891 1.21523 0.97279 0.91200 1.03416 1.22140 0.93211 0.94730 0.86584 0.92570 1.22169 0.98156 0.94552 1.03440 1.21620 0.99659 0.97018 0.97642 1.22166 0.99256 0.98904 0.98603 1.22757 0.93500 0.83863 1.02506 1.87954 1.65005 1.40381 1.39192 0.92551 1.02546 0.98312 0.84863 0.92883 0.97138 0.91487 0.88913 0.91364 0.89602 0.89961 0.91407 0.91545 0.89099 0.88461 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 3 Si 0.98 45.21 29.54 68.60 2.03 47.24 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.90 9.32 25.60 0.24 -31.66 16 8 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 9 C 0.21 11.76 5.44 85.56 0.47 12.23 16 10 N -0.69 -31.85 6.49 -517.93 -3.36 -35.21 16 11 C 0.06 2.51 5.58 86.30 0.48 2.99 16 12 C -0.10 -2.85 5.18 30.59 0.16 -2.70 16 13 C 0.09 2.32 2.64 30.62 0.08 2.40 16 14 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 15 C -0.15 -2.78 5.42 30.68 0.17 -2.61 16 16 C -0.12 -1.88 6.03 30.72 0.19 -1.69 16 17 C -0.15 -2.40 6.14 30.68 0.19 -2.21 16 18 C 0.05 1.03 6.84 72.01 0.49 1.53 16 19 O -0.41 -11.56 9.94 -148.98 -1.48 -13.04 16 20 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 21 H -0.04 -2.66 8.14 -2.39 -0.02 -2.68 16 22 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H 0.33 14.66 8.72 -89.69 -0.78 13.87 16 24 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.01 0.44 7.82 -2.39 -0.02 0.42 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -67.66 285.28 0.64 -67.02 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.25 Total: 13.39 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 2.92 Total: -21.36 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.08 Total: -93.25 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.48 Total: -13.04 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.66 0.64 -67.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224000281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.620 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds