Wall clock time and date at job start Sun Mar 29 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47162 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47122 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.48093 * 55.02187 * 13 12 11 15 15 C 1.53095 * 109.47966 * 175.05479 * 13 12 11 16 16 C 1.53176 * 109.16192 * 177.59081 * 15 13 12 17 17 C 1.53178 * 109.03903 * 303.01951 * 16 15 13 18 18 C 1.53097 * 109.16215 * 56.98139 * 17 16 15 19 19 O 1.42895 * 109.48177 * 294.99716 * 13 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.00901 * 111.00085 * 303.94554 * 10 9 7 24 24 H 1.09005 * 109.46340 * 299.99822 * 11 10 9 25 25 H 1.08991 * 109.47249 * 59.99593 * 11 10 9 26 26 H 1.08998 * 109.47106 * 299.99827 * 12 11 10 27 27 H 1.09005 * 109.47463 * 59.99615 * 12 11 10 28 28 H 1.08991 * 109.52483 * 297.49728 * 15 13 12 29 29 H 1.08999 * 109.52069 * 57.68833 * 15 13 12 30 30 H 1.09005 * 109.54581 * 183.15396 * 16 15 13 31 31 H 1.09001 * 109.61662 * 62.93407 * 16 15 13 32 32 H 1.08994 * 109.52639 * 297.07459 * 17 16 15 33 33 H 1.09005 * 109.57577 * 176.91307 * 17 16 15 34 34 H 1.08997 * 109.47979 * 182.41035 * 18 17 16 35 35 H 1.08999 * 109.49166 * 62.37878 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 6 2.5299 -6.0430 -0.0223 13 6 1.8005 -7.3879 -0.0283 14 1 1.1091 -7.4227 -0.8703 15 6 2.8211 -8.5217 -0.1583 16 6 2.0890 -9.8660 -0.1031 17 6 1.2924 -9.9479 1.2027 18 6 0.3308 -8.7590 1.2801 19 8 1.0733 -7.5412 1.1921 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8404 -3.5453 -0.7913 24 1 0.8799 -4.9856 0.8728 25 1 0.8806 -4.9773 -0.9072 26 1 3.1548 -5.9642 -0.9118 27 1 3.1549 -5.9731 0.8681 28 1 3.3463 -8.4318 -1.1091 29 1 3.5371 -8.4629 0.6614 30 1 2.8149 -10.6784 -0.1388 31 1 1.4088 -9.9474 -0.9509 32 1 1.9774 -9.9180 2.0499 33 1 0.7243 -10.8779 1.2262 34 1 -0.2083 -8.7886 2.2270 35 1 -0.3799 -8.8118 0.4554 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224000330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:36 Heat of formation + Delta-G solvation = -72.629401 kcal Electronic energy + Delta-G solvation = -14130.217282 eV Core-core repulsion = 11741.036247 eV Total energy + Delta-G solvation = -2389.181035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.43600 -35.65537 -33.66718 -33.10465 -31.82993 -28.83510 -26.19487 -24.49645 -23.05136 -21.30755 -20.85579 -20.24813 -16.43685 -16.31209 -16.03090 -14.88673 -14.72405 -14.51243 -14.36954 -13.72590 -13.28861 -12.88598 -12.73265 -12.22843 -11.97971 -11.69908 -11.29636 -11.23528 -10.93483 -10.80758 -10.67802 -10.60492 -10.44918 -10.21674 -9.79232 -9.36902 -9.10285 -8.42285 -7.20167 -5.97735 -3.99632 3.37240 3.40646 3.44150 3.83745 4.46495 4.60736 4.67646 4.74999 4.87836 5.13742 5.21666 5.36768 5.37820 5.49510 5.54081 5.65405 5.66769 5.72822 5.80835 5.88028 5.99448 6.08016 6.19379 6.20764 6.58443 6.69127 7.33148 7.35525 7.50231 7.84400 8.19886 8.48582 8.70043 9.09711 9.64902 11.13476 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.080132 B = 0.004672 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.340708 B = 5991.419452 C = 6204.813787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.692 5.692 11 C 0.062 3.938 12 C -0.108 4.108 13 C 0.092 3.908 14 H 0.055 0.945 15 C -0.150 4.150 16 C -0.123 4.123 17 C -0.156 4.156 18 C 0.059 3.941 19 O -0.372 6.372 20 H 0.261 0.739 21 H 0.028 0.972 22 H -0.015 1.015 23 H 0.325 0.675 24 H 0.071 0.929 25 H 0.013 0.987 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -19.140 -0.722 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.068 4.068 12 C -0.146 4.146 13 C 0.034 3.966 14 H 0.073 0.927 15 C -0.188 4.188 16 C -0.160 4.160 17 C -0.194 4.194 18 C -0.018 4.018 19 O -0.291 6.291 20 H 0.071 0.929 21 H 0.046 0.954 22 H 0.003 0.997 23 H 0.141 0.859 24 H 0.089 0.911 25 H 0.031 0.969 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.678 -18.855 0.117 19.045 hybrid contribution -0.013 0.599 -1.138 1.286 sum 2.665 -18.256 -1.021 18.478 Atomic orbital electron populations 1.69964 1.06097 1.26823 1.50962 1.25001 0.94880 0.99355 0.95399 0.86534 0.79402 0.82654 0.78629 1.20299 1.21359 1.20136 1.21180 0.93484 0.90323 1.50290 0.92017 1.19542 0.90636 0.87388 0.95749 1.60673 1.21316 1.01508 1.48653 1.21836 0.95193 0.89792 0.99953 1.21607 0.98355 0.91738 1.02885 1.22143 0.92568 0.94965 0.86922 0.92749 1.22217 0.98925 0.94799 1.02846 1.21589 0.99282 0.97565 0.97580 1.22196 0.99563 0.99005 0.98648 1.22532 0.93071 0.84253 1.01923 1.88021 1.64167 1.38318 1.38552 0.92900 0.95399 0.99722 0.85880 0.91093 0.96912 0.91106 0.90452 0.90976 0.90941 0.91728 0.91989 0.91098 0.91244 0.89062 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -15.11 9.32 -34.44 -0.32 -15.44 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.35 5.44 -4.98 -0.03 5.33 16 10 N -0.69 -15.77 6.49 -115.06 -0.75 -16.52 16 11 C 0.06 1.20 5.58 -3.82 -0.02 1.18 16 12 C -0.11 -1.64 5.18 -26.74 -0.14 -1.77 16 13 C 0.09 1.22 2.64 -26.68 -0.07 1.15 16 14 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 15 C -0.15 -1.59 5.42 -26.59 -0.14 -1.73 16 16 C -0.12 -1.11 6.03 -26.55 -0.16 -1.27 16 17 C -0.16 -1.42 6.14 -26.59 -0.16 -1.58 16 18 C 0.06 0.65 6.84 37.21 0.25 0.90 16 19 O -0.37 -5.43 9.94 -35.23 -0.35 -5.78 16 20 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 22 H -0.01 -0.44 8.14 -51.93 -0.42 -0.86 16 23 H 0.33 6.94 8.72 -39.29 -0.34 6.60 16 24 H 0.07 1.47 7.82 -51.93 -0.41 1.07 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -31.48 285.28 -8.18 -39.66 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.21 Total: -0.20 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.89 Total: -11.73 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.01 Total: -43.40 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.35 Total: -5.78 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.48 -8.18 -39.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224000330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.966 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds