Wall clock time and date at job start Sun Mar 29 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47162 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47122 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.48093 * 55.02187 * 13 12 11 15 15 C 1.53095 * 109.47966 * 175.05479 * 13 12 11 16 16 C 1.53176 * 109.16192 * 177.59081 * 15 13 12 17 17 C 1.53178 * 109.03903 * 303.01951 * 16 15 13 18 18 C 1.53097 * 109.16215 * 56.98139 * 17 16 15 19 19 O 1.42895 * 109.48177 * 294.99716 * 13 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.00901 * 111.00085 * 303.94554 * 10 9 7 24 24 H 1.09005 * 109.46340 * 299.99822 * 11 10 9 25 25 H 1.08991 * 109.47249 * 59.99593 * 11 10 9 26 26 H 1.08998 * 109.47106 * 299.99827 * 12 11 10 27 27 H 1.09005 * 109.47463 * 59.99615 * 12 11 10 28 28 H 1.08991 * 109.52483 * 297.49728 * 15 13 12 29 29 H 1.08999 * 109.52069 * 57.68833 * 15 13 12 30 30 H 1.09005 * 109.54581 * 183.15396 * 16 15 13 31 31 H 1.09001 * 109.61662 * 62.93407 * 16 15 13 32 32 H 1.08994 * 109.52639 * 297.07459 * 17 16 15 33 33 H 1.09005 * 109.57577 * 176.91307 * 17 16 15 34 34 H 1.08997 * 109.47979 * 182.41035 * 18 17 16 35 35 H 1.08999 * 109.49166 * 62.37878 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 6 2.5299 -6.0430 -0.0223 13 6 1.8005 -7.3879 -0.0283 14 1 1.1091 -7.4227 -0.8703 15 6 2.8211 -8.5217 -0.1583 16 6 2.0890 -9.8660 -0.1031 17 6 1.2924 -9.9479 1.2027 18 6 0.3308 -8.7590 1.2801 19 8 1.0733 -7.5412 1.1921 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8404 -3.5453 -0.7913 24 1 0.8799 -4.9856 0.8728 25 1 0.8806 -4.9773 -0.9072 26 1 3.1548 -5.9642 -0.9118 27 1 3.1549 -5.9731 0.8681 28 1 3.3463 -8.4318 -1.1091 29 1 3.5371 -8.4629 0.6614 30 1 2.8149 -10.6784 -0.1388 31 1 1.4088 -9.9474 -0.9509 32 1 1.9774 -9.9180 2.0499 33 1 0.7243 -10.8779 1.2262 34 1 -0.2083 -8.7886 2.2270 35 1 -0.3799 -8.8118 0.4554 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224000330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:36 Heat of formation + Delta-G solvation = -94.347928 kcal Electronic energy + Delta-G solvation = -14131.159068 eV Core-core repulsion = 11741.036247 eV Total energy + Delta-G solvation = -2390.122821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39536 -37.41451 -34.96884 -34.51858 -33.41663 -30.28082 -27.97829 -25.61135 -24.35603 -23.22806 -22.20431 -21.09970 -18.55207 -17.49861 -16.98877 -16.75735 -16.20942 -15.59108 -15.52916 -14.91453 -14.88909 -14.37042 -14.04105 -13.65521 -13.50423 -13.13531 -12.86952 -12.60265 -12.43167 -12.13110 -12.10901 -11.96047 -11.83469 -11.54732 -11.32789 -11.08673 -10.66216 -10.30201 -9.14894 -8.22930 -6.35303 1.41435 1.46077 1.54103 2.40449 2.89062 3.09941 3.44469 3.91010 3.96033 3.98129 4.05079 4.15289 4.33193 4.41243 4.51830 4.57696 4.68746 4.78530 4.89623 4.95429 5.02601 5.09713 5.12777 5.14157 5.21475 5.23219 5.30458 5.43019 5.60710 6.00396 6.38534 6.43619 6.71752 6.88918 7.35919 8.88937 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.080132 B = 0.004672 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.340708 B = 5991.419452 C = 6204.813787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.207 3.793 10 N -0.690 5.690 11 C 0.065 3.935 12 C -0.097 4.097 13 C 0.092 3.908 14 H 0.056 0.944 15 C -0.146 4.146 16 C -0.122 4.122 17 C -0.152 4.152 18 C 0.050 3.950 19 O -0.405 6.405 20 H 0.266 0.734 21 H -0.005 1.005 22 H -0.040 1.040 23 H 0.336 0.664 24 H 0.048 0.952 25 H 0.013 0.987 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -19.843 -1.274 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.079 3.921 10 N -0.321 5.321 11 C -0.064 4.064 12 C -0.135 4.135 13 C 0.034 3.966 14 H 0.074 0.926 15 C -0.183 4.183 16 C -0.159 4.159 17 C -0.190 4.190 18 C -0.026 4.026 19 O -0.325 6.325 20 H 0.075 0.925 21 H 0.013 0.987 22 H -0.022 1.022 23 H 0.154 0.846 24 H 0.067 0.933 25 H 0.031 0.969 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.059 -19.592 -0.441 20.013 hybrid contribution -0.505 0.766 -0.945 1.317 sum 3.555 -18.826 -1.386 19.209 Atomic orbital electron populations 1.70104 1.07979 1.28175 1.51357 1.26035 0.95835 1.03639 0.94382 0.85305 0.78039 0.77179 0.79271 1.18821 1.20687 1.19266 1.21539 0.93914 0.91322 1.50967 0.91481 1.19207 0.90729 0.89186 0.92978 1.60547 1.20623 1.01653 1.49276 1.21856 0.96161 0.89572 0.98848 1.21524 0.97302 0.91222 1.03448 1.22141 0.93157 0.94707 0.86631 0.92597 1.22172 0.98163 0.94555 1.03435 1.21615 0.99647 0.97017 0.97635 1.22169 0.99259 0.98909 0.98633 1.22762 0.93494 0.83853 1.02533 1.87971 1.64896 1.40390 1.39212 0.92540 0.98729 1.02209 0.84632 0.93296 0.96864 0.89015 0.91328 0.89501 0.91426 0.89974 0.91367 0.91600 0.89089 0.88476 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.37 13.29 21.45 0.28 -58.08 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.98 45.17 29.54 68.60 2.03 47.19 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -32.04 9.32 25.60 0.24 -31.80 16 8 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 9 C 0.21 11.84 5.44 85.56 0.47 12.30 16 10 N -0.69 -31.97 6.49 -517.94 -3.36 -35.33 16 11 C 0.07 2.56 5.58 86.30 0.48 3.04 16 12 C -0.10 -2.88 5.18 30.59 0.16 -2.72 16 13 C 0.09 2.33 2.64 30.63 0.08 2.41 16 14 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 15 C -0.15 -2.77 5.42 30.69 0.17 -2.60 16 16 C -0.12 -1.87 6.03 30.71 0.19 -1.68 16 17 C -0.15 -2.44 6.14 30.69 0.19 -2.26 16 18 C 0.05 1.04 6.84 72.01 0.49 1.54 16 19 O -0.40 -11.76 9.94 -148.98 -1.48 -13.24 16 20 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 21 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 22 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 23 H 0.34 14.30 8.72 -89.69 -0.78 13.51 16 24 H 0.05 2.12 7.82 -2.38 -0.02 2.10 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -68.15 285.28 0.64 -67.51 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.25 Total: 13.31 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 2.92 Total: -21.36 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -3.08 Total: -93.41 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.48 Total: -13.24 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.15 0.64 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224000330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.841 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds