Wall clock time and date at job start Sun Mar 29 2020 22:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 110.29122 * 2 1 4 4 C 1.54263 * 110.32383 * 122.13272 * 2 1 3 5 5 C 1.54380 * 105.06358 * 118.99361 * 4 2 1 6 6 N 1.48570 * 104.59144 * 23.85095 * 5 4 2 7 7 C 1.46894 * 110.99693 * 200.95800 * 6 5 4 8 8 C 1.52998 * 109.47370 * 174.68614 * 7 6 5 9 9 C 1.52990 * 109.47378 * 174.74296 * 8 7 6 10 10 C 1.50707 * 109.47310 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99839 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00499 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00239 * 179.97438 * 12 10 9 14 14 Si 1.86810 * 119.99685 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46813 * 90.00188 * 14 12 10 16 16 H 1.48501 * 109.46888 * 210.00119 * 14 12 10 17 17 H 1.48500 * 109.47209 * 330.00034 * 14 12 10 18 18 C 1.48562 * 104.22202 * 320.51502 * 6 5 4 19 19 H 1.08998 * 109.47284 * 60.69985 * 1 2 3 20 20 H 1.09000 * 109.47359 * 180.70024 * 1 2 3 21 21 H 1.09003 * 109.46982 * 300.70261 * 1 2 3 22 22 H 0.96699 * 113.99606 * 60.67521 * 3 2 1 23 23 H 1.09007 * 110.31816 * 237.89348 * 4 2 1 24 24 H 1.08997 * 110.32003 * 0.09495 * 4 2 1 25 25 H 1.08998 * 110.40868 * 142.62988 * 5 4 2 26 26 H 1.09001 * 110.41050 * 264.95751 * 5 4 2 27 27 H 1.08997 * 109.47401 * 294.68837 * 7 6 5 28 28 H 1.09009 * 109.47116 * 54.68846 * 7 6 5 29 29 H 1.09004 * 109.46670 * 294.74646 * 8 7 6 30 30 H 1.09005 * 109.46900 * 54.73896 * 8 7 6 31 31 H 1.09004 * 109.47506 * 299.99838 * 9 8 7 32 32 H 1.08996 * 109.47501 * 60.00055 * 9 8 7 33 33 H 0.97007 * 120.00109 * 179.97438 * 13 12 10 34 34 H 1.08995 * 110.41323 * 280.70482 * 18 6 5 35 35 H 1.08993 * 110.40596 * 158.26230 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0256 1.3403 0.0000 4 6 2.0658 -0.7694 1.2250 5 6 2.8828 -1.9402 0.6375 6 7 3.2720 -1.4807 -0.7206 7 6 3.6118 -2.6193 -1.5843 8 6 3.8779 -2.1198 -3.0057 9 6 4.3585 -3.2842 -3.8739 10 6 4.6212 -2.7920 -5.2739 11 1 4.4609 -1.7526 -5.5199 12 6 5.0651 -3.6686 -6.2410 13 7 5.2939 -3.2391 -7.4628 14 14 5.3417 -5.4665 -5.8158 15 1 4.0896 -6.2292 -6.0520 16 1 6.4248 -6.0162 -6.6701 17 1 5.7305 -5.5832 -4.3874 18 6 2.0683 -0.7707 -1.2246 19 1 -0.3634 0.5029 -0.8962 20 1 -0.3634 -1.0276 0.0126 21 1 -0.3633 0.5247 0.8836 22 1 1.7561 1.8592 0.7702 23 1 2.7068 -0.1246 1.8263 24 1 1.2388 -1.1485 1.8253 25 1 3.7689 -2.1274 1.2440 26 1 2.2688 -2.8387 0.5754 27 1 4.5040 -3.1134 -1.1998 28 1 2.7820 -3.3261 -1.5969 29 1 2.9590 -1.7093 -3.4245 30 1 4.6438 -1.3446 -2.9810 31 1 5.2774 -3.6946 -3.4551 32 1 3.5926 -4.0593 -3.8987 33 1 5.6066 -3.8559 -8.1432 34 1 1.3263 -1.4856 -1.5801 35 1 2.3412 -0.0775 -2.0202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226207740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:27 Heat of formation + Delta-G solvation = -60.600971 kcal Electronic energy + Delta-G solvation = -14439.981985 eV Core-core repulsion = 12051.322542 eV Total energy + Delta-G solvation = -2388.659443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59822 -36.33726 -33.98800 -32.26060 -30.84091 -29.44149 -27.10984 -25.57321 -22.65386 -20.96131 -20.62082 -19.62477 -16.96570 -16.67754 -15.58649 -15.27782 -14.74013 -14.13760 -13.99180 -13.63106 -13.27824 -12.97842 -12.55604 -12.42867 -12.04369 -11.76568 -11.56257 -11.49594 -11.18379 -10.82318 -10.66997 -10.58611 -10.05497 -9.91700 -9.65658 -9.53488 -9.12623 -8.49670 -8.25945 -5.99852 -3.97402 3.32984 3.40264 3.44500 4.07256 4.15856 4.48844 4.50073 4.58965 4.88701 5.09390 5.23069 5.33929 5.39214 5.55754 5.59786 5.68414 5.70362 5.72254 5.88411 5.91633 5.99672 6.14197 6.19385 6.53491 6.63667 6.89106 7.07917 7.24931 7.38949 7.50656 7.63998 7.84577 8.59827 9.06002 9.62778 11.13802 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053474 B = 0.005854 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.492545 B = 4782.245939 C = 5041.853966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.123 3.877 3 O -0.548 6.548 4 C -0.151 4.151 5 C 0.031 3.969 6 N -0.506 5.506 7 C 0.042 3.958 8 C -0.099 4.099 9 C -0.013 4.013 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.046 3.954 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.370 0.630 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.008 0.992 33 H 0.262 0.738 34 H 0.056 0.944 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 3.753 18.385 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.082 3.918 3 O -0.353 6.353 4 C -0.189 4.189 5 C -0.097 4.097 6 N -0.230 5.230 7 C -0.086 4.086 8 C -0.137 4.137 9 C -0.051 4.051 10 C -0.556 4.556 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.082 4.082 19 H 0.085 0.915 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.217 0.783 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.346 3.824 17.643 19.889 hybrid contribution -0.808 -1.445 0.564 1.748 sum -9.153 2.379 18.207 20.517 Atomic orbital electron populations 1.22467 0.95357 1.02684 1.02621 1.21959 0.91805 0.82881 0.95198 1.86664 1.76909 1.23375 1.48330 1.23090 0.99750 0.98252 0.97791 1.23068 0.98777 0.95895 0.91982 1.65486 1.32169 1.23667 1.01636 1.22511 0.99925 0.91154 0.94978 1.21486 1.01086 0.99977 0.91175 1.19552 0.95714 0.94035 0.95780 1.21159 1.44283 0.97609 0.92545 0.91013 1.25038 0.94963 0.98699 0.94871 1.69922 1.46724 1.35398 1.02384 0.86769 0.78029 0.85628 0.78796 1.20401 1.21398 1.19032 1.23072 0.91736 0.96910 0.96433 0.91459 0.91587 0.92268 0.78318 0.90269 0.91071 0.90198 0.93994 0.90856 0.95238 0.92987 0.91775 0.96576 0.97339 0.92802 0.92562 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 8.58 37.16 0.32 -1.27 16 2 C 0.12 1.42 1.44 -89.23 -0.13 1.30 16 3 O -0.55 -6.72 12.96 -35.23 -0.46 -7.17 16 4 C -0.15 -1.55 6.45 -25.35 -0.16 -1.71 16 5 C 0.03 0.38 6.49 -2.18 -0.01 0.37 16 6 N -0.51 -7.96 5.45 -229.97 -1.25 -9.22 16 7 C 0.04 0.73 4.93 -3.83 -0.02 0.71 16 8 C -0.10 -2.08 4.86 -26.74 -0.13 -2.21 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 11 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 12 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 14 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 18 C 0.05 0.68 4.62 -2.18 -0.01 0.67 16 19 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.37 2.80 9.09 45.56 0.41 3.21 16 23 H 0.08 0.78 7.98 -51.93 -0.41 0.37 16 24 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.03 0.49 7.97 -51.92 -0.41 0.07 16 29 H 0.05 1.09 7.21 -51.93 -0.37 0.71 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 32 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 35 H 0.09 1.58 7.72 -51.93 -0.40 1.18 16 LS Contribution 280.33 15.07 4.22 4.22 Total: -1.00 -32.70 280.33 -7.36 -40.06 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.29 Total: -1.29 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.69 Total: -16.33 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.48 Total: -37.02 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.46 Total: -7.17 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.70 -7.36 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226207740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.537 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds