Wall clock time and date at job start Sun Mar 29 2020 22:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 110.29122 * 2 1 4 4 C 1.54263 * 110.32383 * 122.13272 * 2 1 3 5 5 C 1.54380 * 105.06358 * 118.99361 * 4 2 1 6 6 N 1.48570 * 104.59144 * 23.85095 * 5 4 2 7 7 C 1.46894 * 110.99693 * 200.95800 * 6 5 4 8 8 C 1.52998 * 109.47370 * 174.68614 * 7 6 5 9 9 C 1.52990 * 109.47378 * 174.74296 * 8 7 6 10 10 C 1.50707 * 109.47310 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99839 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00499 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00239 * 179.97438 * 12 10 9 14 14 Si 1.86810 * 119.99685 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46813 * 90.00188 * 14 12 10 16 16 H 1.48501 * 109.46888 * 210.00119 * 14 12 10 17 17 H 1.48500 * 109.47209 * 330.00034 * 14 12 10 18 18 C 1.48562 * 104.22202 * 320.51502 * 6 5 4 19 19 H 1.08998 * 109.47284 * 60.69985 * 1 2 3 20 20 H 1.09000 * 109.47359 * 180.70024 * 1 2 3 21 21 H 1.09003 * 109.46982 * 300.70261 * 1 2 3 22 22 H 0.96699 * 113.99606 * 60.67521 * 3 2 1 23 23 H 1.09007 * 110.31816 * 237.89348 * 4 2 1 24 24 H 1.08997 * 110.32003 * 0.09495 * 4 2 1 25 25 H 1.08998 * 110.40868 * 142.62988 * 5 4 2 26 26 H 1.09001 * 110.41050 * 264.95751 * 5 4 2 27 27 H 1.08997 * 109.47401 * 294.68837 * 7 6 5 28 28 H 1.09009 * 109.47116 * 54.68846 * 7 6 5 29 29 H 1.09004 * 109.46670 * 294.74646 * 8 7 6 30 30 H 1.09005 * 109.46900 * 54.73896 * 8 7 6 31 31 H 1.09004 * 109.47506 * 299.99838 * 9 8 7 32 32 H 1.08996 * 109.47501 * 60.00055 * 9 8 7 33 33 H 0.97007 * 120.00109 * 179.97438 * 13 12 10 34 34 H 1.08995 * 110.41323 * 280.70482 * 18 6 5 35 35 H 1.08993 * 110.40596 * 158.26230 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0256 1.3403 0.0000 4 6 2.0658 -0.7694 1.2250 5 6 2.8828 -1.9402 0.6375 6 7 3.2720 -1.4807 -0.7206 7 6 3.6118 -2.6193 -1.5843 8 6 3.8779 -2.1198 -3.0057 9 6 4.3585 -3.2842 -3.8739 10 6 4.6212 -2.7920 -5.2739 11 1 4.4609 -1.7526 -5.5199 12 6 5.0651 -3.6686 -6.2410 13 7 5.2939 -3.2391 -7.4628 14 14 5.3417 -5.4665 -5.8158 15 1 4.0896 -6.2292 -6.0520 16 1 6.4248 -6.0162 -6.6701 17 1 5.7305 -5.5832 -4.3874 18 6 2.0683 -0.7707 -1.2246 19 1 -0.3634 0.5029 -0.8962 20 1 -0.3634 -1.0276 0.0126 21 1 -0.3633 0.5247 0.8836 22 1 1.7561 1.8592 0.7702 23 1 2.7068 -0.1246 1.8263 24 1 1.2388 -1.1485 1.8253 25 1 3.7689 -2.1274 1.2440 26 1 2.2688 -2.8387 0.5754 27 1 4.5040 -3.1134 -1.1998 28 1 2.7820 -3.3261 -1.5969 29 1 2.9590 -1.7093 -3.4245 30 1 4.6438 -1.3446 -2.9810 31 1 5.2774 -3.6946 -3.4551 32 1 3.5926 -4.0593 -3.8987 33 1 5.6066 -3.8559 -8.1432 34 1 1.3263 -1.4856 -1.5801 35 1 2.3412 -0.0775 -2.0202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226207740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:27 Heat of formation + Delta-G solvation = -86.315041 kcal Electronic energy + Delta-G solvation = -14441.097030 eV Core-core repulsion = 12051.322542 eV Total energy + Delta-G solvation = -2389.774489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60248 -37.49604 -35.74004 -34.05789 -32.16099 -30.53741 -28.57499 -26.88954 -24.17512 -22.32455 -21.85758 -20.97427 -18.90526 -17.90893 -16.76421 -16.51771 -16.16620 -15.71321 -15.22936 -14.88417 -14.61918 -14.36239 -14.00331 -13.58503 -13.37998 -13.20273 -12.88321 -12.70985 -12.53027 -12.24495 -11.98975 -11.79418 -11.54396 -11.53767 -11.42717 -11.26052 -10.88242 -10.77632 -9.42508 -8.30490 -6.35561 1.34937 1.37946 1.50370 2.35947 3.01724 3.04491 3.25686 3.61740 3.67462 4.02053 4.14301 4.25636 4.28816 4.42580 4.59948 4.63568 4.69087 4.74874 4.82589 4.87508 4.95628 4.98015 5.03826 5.07621 5.16814 5.27633 5.47443 5.55118 5.64167 5.90408 6.06395 6.28346 6.72349 6.97626 7.29039 8.86823 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053474 B = 0.005854 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.492545 B = 4782.245939 C = 5041.853966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 O -0.573 6.573 4 C -0.141 4.141 5 C 0.027 3.973 6 N -0.527 5.527 7 C 0.054 3.946 8 C -0.090 4.090 9 C -0.008 4.008 10 C -0.537 4.537 11 H 0.025 0.975 12 C 0.001 3.999 13 N -0.954 5.954 14 Si 0.957 3.043 15 H -0.264 1.264 16 H -0.282 1.282 17 H -0.245 1.245 18 C 0.039 3.961 19 H 0.056 0.944 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.390 0.610 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.059 0.941 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 2.080 21.133 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.082 3.918 3 O -0.381 6.381 4 C -0.179 4.179 5 C -0.100 4.100 6 N -0.251 5.251 7 C -0.074 4.074 8 C -0.128 4.128 9 C -0.046 4.046 10 C -0.575 4.575 11 H 0.044 0.956 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.779 3.221 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.168 1.168 18 C -0.089 4.089 19 H 0.075 0.925 20 H 0.092 0.908 21 H 0.103 0.897 22 H 0.240 0.760 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.253 2.176 20.426 22.529 hybrid contribution -0.526 -0.783 -0.345 1.004 sum -9.778 1.393 20.081 22.379 Atomic orbital electron populations 1.22414 0.93277 1.03450 1.03367 1.21950 0.93222 0.82481 0.94114 1.86610 1.77509 1.24038 1.49982 1.23070 1.00406 0.97219 0.97211 1.23197 0.99707 0.97221 0.89917 1.65409 1.33291 1.23304 1.03065 1.22269 1.00723 0.91811 0.92630 1.21290 0.99758 0.98157 0.93554 1.19483 0.96337 0.95395 0.93387 1.21509 1.44612 0.95873 0.95510 0.95649 1.26102 0.94353 1.04604 0.94437 1.70086 1.47848 1.37649 1.03838 0.85564 0.78562 0.78308 0.79632 1.18879 1.20816 1.16805 1.23092 0.91632 0.96858 0.97329 0.92528 0.90823 0.89712 0.75984 0.89746 0.88169 0.89552 0.92855 0.90303 0.93992 0.93926 0.93907 0.95948 0.96041 0.92425 0.92258 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 8.58 71.98 0.62 -2.00 16 2 C 0.12 2.63 1.44 -9.89 -0.01 2.62 16 3 O -0.57 -13.37 12.96 -148.98 -1.93 -15.30 16 4 C -0.14 -2.43 6.45 31.49 0.20 -2.23 16 5 C 0.03 0.60 6.49 86.45 0.56 1.16 16 6 N -0.53 -16.01 5.45 -881.48 -4.81 -20.82 16 7 C 0.05 1.79 4.93 86.30 0.43 2.22 16 8 C -0.09 -3.82 4.86 30.59 0.15 -3.67 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.54 -32.64 9.66 25.60 0.25 -32.40 16 11 H 0.03 1.71 7.99 -2.91 -0.02 1.68 16 12 C 0.00 0.09 5.47 84.65 0.46 0.55 16 13 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 14 Si 0.96 45.21 27.47 68.60 1.88 47.09 16 15 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 18 C 0.04 1.13 4.62 86.45 0.40 1.53 16 19 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 20 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.39 5.11 9.09 -74.06 -0.67 4.44 16 23 H 0.08 1.39 7.98 -2.38 -0.02 1.37 16 24 H 0.10 1.18 7.71 -2.39 -0.02 1.17 16 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.07 7.90 -2.39 -0.02 1.05 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.04 1.29 7.97 -2.38 -0.02 1.27 16 29 H 0.04 1.85 7.21 -2.38 -0.02 1.83 16 30 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.02 1.06 7.20 -2.38 -0.02 1.05 16 32 H 0.02 0.99 7.57 -2.39 -0.02 0.98 16 33 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 34 H 0.06 1.64 7.70 -2.39 -0.02 1.62 16 35 H 0.06 2.15 7.72 -2.39 -0.02 2.13 16 Total: -1.00 -72.47 280.33 -1.06 -73.54 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.32 Total: 9.48 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.17 Total: -32.51 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -4.51 Total: -82.30 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -1.93 Total: -15.30 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -72.47 -1.06 -73.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226207740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.779 kcal (2) G-P(sol) polarization free energy of solvation -72.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds