Wall clock time and date at job start Sun Mar 29 2020 21:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 110.63656 * 2 1 4 4 C 1.55147 * 110.87316 * 236.74951 * 2 1 3 5 5 C 1.54914 * 101.57928 * 206.06304 * 4 2 1 6 6 N 1.47424 * 104.83329 * 37.01130 * 5 4 2 7 7 C 1.34773 * 125.65220 * 155.89586 * 6 5 4 8 8 O 1.21692 * 120.00124 * 179.97438 * 7 6 5 9 9 C 1.46373 * 119.99852 * 359.97154 * 7 6 5 10 10 H 1.07999 * 120.00351 * 359.97438 * 9 7 6 11 11 C 1.40048 * 120.00163 * 180.02562 * 9 7 6 12 12 N 1.30672 * 119.99791 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00197 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47368 * 60.00176 * 13 11 9 15 15 H 1.48505 * 109.47403 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47130 * 299.99652 * 13 11 9 17 17 C 1.47027 * 108.70068 * 335.86880 * 6 5 4 18 18 H 1.09002 * 109.88429 * 241.64452 * 17 6 5 19 19 C 1.53005 * 110.00938 * 120.54859 * 17 6 5 20 20 O 1.42901 * 109.46810 * 66.80327 * 19 17 6 21 21 H 1.08995 * 109.47752 * 296.86462 * 1 2 3 22 22 H 1.09000 * 109.46551 * 56.86775 * 1 2 3 23 23 H 1.09001 * 109.46542 * 176.85956 * 1 2 3 24 24 H 1.08997 * 111.00659 * 324.13424 * 4 2 1 25 25 H 1.08999 * 111.00719 * 87.95401 * 4 2 1 26 26 H 1.09000 * 110.36623 * 155.84512 * 5 4 2 27 27 H 1.09001 * 110.36874 * 278.05773 * 5 4 2 28 28 H 0.97005 * 120.00295 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.46776 * 186.79896 * 19 17 6 30 30 H 1.08996 * 109.47335 * 306.80172 * 19 17 6 31 31 H 0.96702 * 114.00125 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0829 -0.7948 -1.2123 5 6 3.4675 -1.2454 -0.6835 6 7 3.2471 -1.5460 0.7429 7 6 3.9956 -2.3767 1.4953 8 8 3.7201 -2.5499 2.6680 9 6 5.1397 -3.0706 0.9021 10 1 5.3839 -2.9173 -0.1387 11 6 5.9172 -3.9342 1.6838 12 7 5.6214 -4.1201 2.9430 13 14 7.3768 -4.8203 0.9266 14 1 8.3515 -3.8226 0.4169 15 1 8.0291 -5.6691 1.9559 16 1 6.9100 -5.6742 -0.1951 17 6 2.0760 -0.7890 1.2087 18 1 2.3711 -0.0989 1.9992 19 6 1.0051 -1.7495 1.7298 20 8 1.4796 -2.3955 2.9128 21 1 -0.3634 0.4643 0.9167 22 1 -0.3632 0.5617 -0.8606 23 1 -0.3632 -1.0262 -0.0563 24 1 1.4516 -1.6547 -1.4365 25 1 2.1881 -0.1517 -2.0860 26 1 3.8032 -2.1378 -1.2117 27 1 4.1961 -0.4425 -0.7956 28 1 6.1596 -4.7186 3.4844 29 1 0.0974 -1.1915 1.9596 30 1 0.7879 -2.4990 0.9688 31 1 0.8508 -3.0206 3.2988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226342224.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:17 Heat of formation + Delta-G solvation = -81.557885 kcal Electronic energy + Delta-G solvation = -15042.518385 eV Core-core repulsion = 12517.117087 eV Total energy + Delta-G solvation = -2525.401298 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.02472 -35.78719 -35.25118 -32.39281 -31.86146 -29.43707 -27.12075 -25.41913 -23.90445 -21.86089 -19.79083 -18.18229 -17.03591 -16.20827 -15.33091 -15.13318 -14.47102 -14.05063 -13.46185 -13.04052 -12.83683 -12.61640 -12.21709 -11.80704 -11.56868 -11.31657 -11.08404 -10.91165 -10.64672 -10.56073 -10.30408 -10.15886 -10.08993 -9.84421 -9.01411 -8.71611 -7.28789 -6.96305 -6.03487 -4.48660 3.21640 3.25982 3.27862 4.17215 4.65792 4.72180 4.82852 5.07418 5.10205 5.38653 5.64615 5.74750 5.83036 5.87411 5.92305 5.95140 6.02372 6.13911 6.18344 6.37698 6.41664 6.51966 6.69919 6.84560 7.53924 7.55615 8.26245 8.56347 8.61298 9.15721 9.71989 10.75761 11.01500 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043484 B = 0.010212 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.754657 B = 2741.329328 C = 3252.605777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.079 0.921 4 C -0.130 4.130 5 C 0.116 3.884 6 N -0.639 5.639 7 C 0.565 3.435 8 O -0.529 6.529 9 C -0.543 4.543 10 H 0.064 0.936 11 C 0.087 3.913 12 N -0.770 5.770 13 Si 0.904 3.096 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.270 1.270 17 C 0.148 3.852 18 H 0.058 0.942 19 C 0.069 3.931 20 O -0.516 6.516 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 5.248 -7.281 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.168 4.168 5 C -0.009 4.009 6 N -0.380 5.380 7 C 0.369 3.631 8 O -0.407 6.407 9 C -0.580 4.580 10 H 0.082 0.918 11 C -0.131 4.131 12 N -0.400 5.400 13 Si 0.729 3.271 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.195 1.195 17 C 0.043 3.957 18 H 0.076 0.924 19 C -0.010 4.010 20 O -0.317 6.317 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.455 5.355 -6.469 11.230 hybrid contribution 0.213 -0.722 -0.481 0.893 sum -7.243 4.633 -6.950 11.056 Atomic orbital electron populations 1.21846 0.94877 1.01913 1.01328 1.22162 0.95481 0.99061 0.95123 0.90227 1.22885 0.97678 0.99501 0.96782 1.21879 0.94703 0.99511 0.84787 1.48942 1.30413 1.49247 1.09393 1.18050 0.81957 0.77626 0.85490 1.90694 1.70154 1.64188 1.15663 1.20862 1.12286 1.27588 0.97291 0.91765 1.25676 0.97522 0.95580 0.94369 1.70025 1.34877 1.28946 1.06105 0.86502 0.81691 0.79615 0.79288 1.19418 1.20651 1.19458 1.21121 0.87494 0.92357 0.94759 0.92375 1.22631 0.95247 0.94835 0.88309 1.87260 1.43551 1.59930 1.40970 0.92515 0.92791 0.92300 0.91287 0.91137 0.91399 0.93716 0.92298 0.94900 0.94997 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.94 37.16 0.30 -1.40 16 2 C -0.10 -1.47 3.46 -88.79 -0.31 -1.78 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.13 -1.91 6.54 -24.58 -0.16 -2.07 16 5 C 0.12 2.22 6.52 -2.53 -0.02 2.21 16 6 N -0.64 -15.38 3.08 -164.65 -0.51 -15.89 16 7 C 0.56 16.85 7.53 -12.99 -0.10 16.76 16 8 O -0.53 -17.59 12.13 -19.18 -0.23 -17.83 16 9 C -0.54 -15.96 8.98 -35.63 -0.32 -16.28 16 10 H 0.06 1.74 6.64 -52.49 -0.35 1.39 16 11 C 0.09 2.52 5.50 -17.37 -0.10 2.43 16 12 N -0.77 -23.80 11.83 55.55 0.66 -23.15 16 13 Si 0.90 20.84 29.56 -169.99 -5.02 15.81 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 C 0.15 3.01 3.26 -66.95 -0.22 2.80 16 18 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 19 C 0.07 1.34 5.36 37.16 0.20 1.54 16 20 O -0.52 -12.11 10.20 -59.61 -0.61 -12.72 16 21 H 0.06 0.64 7.56 -51.93 -0.39 0.25 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.71 6.72 -51.93 -0.35 0.36 16 24 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.33 7.14 -51.93 -0.37 0.96 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.27 7.50 8.29 -40.82 -0.34 7.17 16 29 H 0.03 0.52 6.33 -51.93 -0.33 0.20 16 30 H 0.03 0.62 7.81 -51.93 -0.41 0.21 16 31 H 0.35 6.44 9.12 45.56 0.42 6.86 16 LS Contribution 251.59 15.07 3.79 3.79 Total: -1.00 -36.40 251.59 -6.09 -42.49 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.44 Total: 3.28 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.72 Total: 4.20 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.15 Total: -39.03 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.84 Total: -30.54 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -36.40 -6.09 -42.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226342224.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.063 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds