Wall clock time and date at job start Sun Mar 29 2020 21:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 110.63656 * 2 1 4 4 C 1.55147 * 110.87316 * 236.74951 * 2 1 3 5 5 C 1.54914 * 101.57928 * 206.06304 * 4 2 1 6 6 N 1.47424 * 104.83329 * 37.01130 * 5 4 2 7 7 C 1.34773 * 125.65220 * 155.89586 * 6 5 4 8 8 O 1.21692 * 120.00124 * 179.97438 * 7 6 5 9 9 C 1.46373 * 119.99852 * 359.97154 * 7 6 5 10 10 H 1.07999 * 120.00351 * 359.97438 * 9 7 6 11 11 C 1.40048 * 120.00163 * 180.02562 * 9 7 6 12 12 N 1.30672 * 119.99791 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00197 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47368 * 60.00176 * 13 11 9 15 15 H 1.48505 * 109.47403 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47130 * 299.99652 * 13 11 9 17 17 C 1.47027 * 108.70068 * 335.86880 * 6 5 4 18 18 H 1.09002 * 109.88429 * 241.64452 * 17 6 5 19 19 C 1.53005 * 110.00938 * 120.54859 * 17 6 5 20 20 O 1.42901 * 109.46810 * 66.80327 * 19 17 6 21 21 H 1.08995 * 109.47752 * 296.86462 * 1 2 3 22 22 H 1.09000 * 109.46551 * 56.86775 * 1 2 3 23 23 H 1.09001 * 109.46542 * 176.85956 * 1 2 3 24 24 H 1.08997 * 111.00659 * 324.13424 * 4 2 1 25 25 H 1.08999 * 111.00719 * 87.95401 * 4 2 1 26 26 H 1.09000 * 110.36623 * 155.84512 * 5 4 2 27 27 H 1.09001 * 110.36874 * 278.05773 * 5 4 2 28 28 H 0.97005 * 120.00295 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.46776 * 186.79896 * 19 17 6 30 30 H 1.08996 * 109.47335 * 306.80172 * 19 17 6 31 31 H 0.96702 * 114.00125 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0829 -0.7948 -1.2123 5 6 3.4675 -1.2454 -0.6835 6 7 3.2471 -1.5460 0.7429 7 6 3.9956 -2.3767 1.4953 8 8 3.7201 -2.5499 2.6680 9 6 5.1397 -3.0706 0.9021 10 1 5.3839 -2.9173 -0.1387 11 6 5.9172 -3.9342 1.6838 12 7 5.6214 -4.1201 2.9430 13 14 7.3768 -4.8203 0.9266 14 1 8.3515 -3.8226 0.4169 15 1 8.0291 -5.6691 1.9559 16 1 6.9100 -5.6742 -0.1951 17 6 2.0760 -0.7890 1.2087 18 1 2.3711 -0.0989 1.9992 19 6 1.0051 -1.7495 1.7298 20 8 1.4796 -2.3955 2.9128 21 1 -0.3634 0.4643 0.9167 22 1 -0.3632 0.5617 -0.8606 23 1 -0.3632 -1.0262 -0.0563 24 1 1.4516 -1.6547 -1.4365 25 1 2.1881 -0.1517 -2.0860 26 1 3.8032 -2.1378 -1.2117 27 1 4.1961 -0.4425 -0.7956 28 1 6.1596 -4.7186 3.4844 29 1 0.0974 -1.1915 1.9596 30 1 0.7879 -2.4990 0.9688 31 1 0.8508 -3.0206 3.2988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226342224.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:16 Heat of formation + Delta-G solvation = -109.428010 kcal Electronic energy + Delta-G solvation = -15043.726924 eV Core-core repulsion = 12517.117087 eV Total energy + Delta-G solvation = -2526.609837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63416 -37.83855 -36.93994 -34.56100 -33.49086 -30.97121 -28.92764 -27.21276 -25.35029 -23.49035 -21.49741 -19.77955 -18.76576 -18.09799 -17.42999 -16.66906 -16.23454 -15.82984 -14.83932 -14.79048 -14.37949 -13.98153 -13.66003 -13.58052 -13.24588 -12.96294 -12.70777 -12.68789 -12.41093 -12.22139 -11.97955 -11.74800 -11.50299 -11.27212 -10.87459 -10.63695 -9.54813 -8.90422 -8.20271 -6.76709 1.37393 1.42181 1.52638 2.25144 2.56690 2.94649 3.42644 3.69716 3.77485 3.93348 4.11107 4.35503 4.43496 4.45021 4.57859 4.66498 4.81805 4.89532 4.95512 5.02643 5.18061 5.27393 5.34710 5.37125 5.48673 5.75717 6.12462 6.54059 6.93198 7.11929 7.65308 8.61355 8.82879 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043484 B = 0.010212 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.754657 B = 2741.329328 C = 3252.605777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.094 0.906 4 C -0.114 4.114 5 C 0.104 3.896 6 N -0.650 5.650 7 C 0.545 3.455 8 O -0.579 6.579 9 C -0.573 4.573 10 H 0.079 0.921 11 C 0.028 3.972 12 N -0.823 5.823 13 Si 0.994 3.006 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.255 1.255 17 C 0.133 3.867 18 H 0.025 0.975 19 C 0.070 3.930 20 O -0.560 6.560 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.271 0.729 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 5.880 -9.881 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.112 0.888 4 C -0.151 4.151 5 C -0.019 4.019 6 N -0.389 5.389 7 C 0.348 3.652 8 O -0.462 6.462 9 C -0.610 4.610 10 H 0.097 0.903 11 C -0.187 4.187 12 N -0.453 5.453 13 Si 0.813 3.187 14 H -0.180 1.180 15 H -0.198 1.198 16 H -0.179 1.179 17 C 0.028 3.972 18 H 0.043 0.957 19 C -0.009 4.009 20 O -0.364 6.364 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.130 0.870 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.014 6.026 -9.125 13.557 hybrid contribution 0.317 -0.844 0.332 0.961 sum -7.697 5.181 -8.793 12.783 Atomic orbital electron populations 1.21830 0.92024 1.02508 1.03130 1.22180 0.97648 0.98673 0.92006 0.88784 1.22857 0.94229 1.00267 0.97780 1.22161 0.98154 0.99429 0.82150 1.48726 1.30781 1.48145 1.11252 1.18400 0.82796 0.78488 0.85466 1.90642 1.71666 1.66157 1.17698 1.21371 1.12970 1.28404 0.98235 0.90317 1.26929 1.01016 0.96065 0.94645 1.70212 1.36832 1.30059 1.08246 0.85139 0.76771 0.78248 0.78506 1.18021 1.19821 1.17911 1.21520 0.86818 0.92256 0.96579 0.95669 1.22784 0.96282 0.94786 0.87050 1.87217 1.45671 1.60888 1.42629 0.91942 0.89670 0.92464 0.90837 0.86999 0.92398 0.93089 0.91896 0.90803 0.95022 0.78989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 7.94 71.98 0.57 -2.12 16 2 C -0.09 -2.30 3.46 -9.61 -0.03 -2.34 16 3 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 4 C -0.11 -2.94 6.54 31.98 0.21 -2.73 16 5 C 0.10 3.90 6.52 86.86 0.57 4.47 16 6 N -0.65 -31.85 3.08 -793.06 -2.45 -34.29 16 7 C 0.54 33.80 7.53 86.36 0.65 34.45 16 8 O -0.58 -40.56 12.13 18.99 0.23 -40.33 16 9 C -0.57 -34.49 8.98 24.83 0.22 -34.27 16 10 H 0.08 4.32 6.64 -2.91 -0.02 4.30 16 11 C 0.03 1.62 5.50 85.30 0.47 2.09 16 12 N -0.82 -52.73 11.83 21.84 0.26 -52.48 16 13 Si 0.99 43.06 29.56 68.60 2.03 45.08 16 14 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 C 0.13 5.41 3.26 45.34 0.15 5.56 16 18 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 19 C 0.07 2.68 5.36 71.98 0.39 3.07 16 20 O -0.56 -27.33 10.20 -125.67 -1.28 -28.61 16 21 H 0.06 1.17 7.56 -2.39 -0.02 1.16 16 22 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.16 6.72 -2.39 -0.02 1.15 16 24 H 0.07 1.87 8.03 -2.39 -0.02 1.85 16 25 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.24 7.14 -2.39 -0.02 2.23 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.27 15.80 8.29 -92.70 -0.77 15.03 16 29 H 0.07 2.21 6.33 -2.39 -0.02 2.20 16 30 H 0.03 1.20 7.81 -2.39 -0.02 1.19 16 31 H 0.36 14.08 9.12 -74.06 -0.68 13.40 16 Total: -1.00 -84.04 251.59 2.43 -81.60 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.46 Total: 20.84 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 3.19 Total: 8.18 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.19 Total: -86.77 kcal Atomic # 8 Polarization: -67.89 SS G_CDS: -1.05 Total: -68.94 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -84.04 2.43 -81.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226342224.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.827 kcal (2) G-P(sol) polarization free energy of solvation -84.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds