Wall clock time and date at job start Sun Mar 29 2020 21:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.55154 * 110.72058 * 123.13930 * 2 1 3 5 5 C 1.54908 * 101.58289 * 154.04311 * 4 2 1 6 6 N 1.47425 * 104.92961 * 322.93718 * 5 4 2 7 7 C 1.34774 * 125.65138 * 204.15299 * 6 5 4 8 8 O 1.21689 * 120.00250 * 180.02562 * 7 6 5 9 9 C 1.46376 * 119.99772 * 0.02854 * 7 6 5 10 10 H 1.07995 * 119.99988 * 359.97438 * 9 7 6 11 11 C 1.40054 * 119.99855 * 179.97438 * 9 7 6 12 12 N 1.30668 * 120.00119 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99680 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47286 * 89.99867 * 13 11 9 15 15 H 1.48502 * 109.46717 * 210.00040 * 13 11 9 16 16 H 1.48500 * 109.47343 * 329.99399 * 13 11 9 17 17 C 1.47290 * 108.55742 * 24.15407 * 6 5 4 18 18 H 1.09004 * 109.85762 * 239.50064 * 17 6 5 19 19 C 1.53000 * 110.00093 * 118.43106 * 17 6 5 20 20 O 1.42895 * 109.47104 * 67.07912 * 19 17 6 21 21 H 1.08999 * 109.47317 * 298.31220 * 1 2 3 22 22 H 1.09002 * 109.47201 * 58.31660 * 1 2 3 23 23 H 1.09001 * 109.47161 * 178.31188 * 1 2 3 24 24 H 1.09008 * 111.00345 * 35.96781 * 4 2 1 25 25 H 1.09000 * 111.03743 * 272.13748 * 4 2 1 26 26 H 1.09002 * 110.36632 * 81.83114 * 5 4 2 27 27 H 1.08995 * 110.36781 * 204.04351 * 5 4 2 28 28 H 0.97001 * 120.00142 * 179.97438 * 12 11 9 29 29 H 1.09008 * 109.46662 * 187.07502 * 19 17 6 30 30 H 1.08994 * 109.47266 * 307.07338 * 19 17 6 31 31 H 0.96705 * 114.00256 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7933 1.2151 5 6 3.4652 -1.2446 0.6914 6 7 3.2516 -1.5489 -0.7352 7 6 4.0034 -2.3816 -1.4820 8 8 3.7335 -2.5579 -2.6554 9 6 5.1447 -3.0742 -0.8815 10 1 5.3844 -2.9175 0.1598 11 6 5.9257 -3.9400 -1.6573 12 7 5.6353 -4.1299 -2.9171 13 14 7.3825 -4.8231 -0.8911 14 1 6.9352 -6.1253 -0.3349 15 1 8.4200 -5.0576 -1.9274 16 1 7.9505 -3.9885 0.1980 17 6 2.0799 -0.7906 -1.2059 18 1 1.3191 -1.4773 -1.5770 19 6 2.4942 0.1764 -2.3169 20 8 2.8921 -0.5664 -3.4710 21 1 -0.3634 0.4874 0.9047 22 1 -0.3634 0.5398 -0.8745 23 1 -0.3633 -1.0272 -0.0303 24 1 1.4468 -1.6529 1.4384 25 1 2.1819 -0.1495 2.0886 26 1 4.1929 -0.4409 0.8030 27 1 3.8001 -2.1352 1.2232 28 1 6.1764 -4.7293 -3.4545 29 1 1.6517 0.8196 -2.5715 30 1 3.3280 0.7886 -1.9735 31 1 3.1680 -0.0163 -4.2169 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226342230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:19 Heat of formation + Delta-G solvation = -114.310096 kcal Electronic energy + Delta-G solvation = -14959.406644 eV Core-core repulsion = 12432.585104 eV Total energy + Delta-G solvation = -2526.821540 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49991 -37.77157 -37.04566 -34.55872 -33.35274 -31.03233 -29.06332 -27.59518 -24.62750 -23.43779 -21.56866 -20.41137 -18.37373 -18.00923 -17.46471 -17.05608 -16.02917 -15.35253 -15.21890 -14.78647 -14.47736 -13.98521 -13.78037 -13.43635 -13.26725 -12.86990 -12.72561 -12.48628 -12.38069 -12.36407 -11.96594 -11.72428 -11.55774 -11.43467 -10.88991 -10.72866 -9.55929 -8.90443 -8.20659 -6.76761 1.37558 1.40451 1.54388 2.25064 2.56580 2.94309 3.38908 3.67387 3.75458 4.01475 4.17747 4.29562 4.42298 4.44580 4.59370 4.67716 4.68737 4.90240 4.96239 5.13389 5.16876 5.21246 5.33988 5.37398 5.50930 5.76181 6.12591 6.53930 6.93231 7.08860 7.65640 8.61239 8.82606 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.010208 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.777674 B = 2742.390049 C = 3267.487606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.100 0.900 4 C -0.115 4.115 5 C 0.105 3.895 6 N -0.651 5.651 7 C 0.546 3.454 8 O -0.583 6.583 9 C -0.572 4.572 10 H 0.079 0.921 11 C 0.027 3.973 12 N -0.824 5.824 13 Si 0.994 3.006 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.250 1.250 17 C 0.136 3.864 18 H 0.029 0.971 19 C 0.068 3.932 20 O -0.561 6.561 21 H 0.087 0.913 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.271 0.729 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 9.395 8.850 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.118 0.882 4 C -0.153 4.153 5 C -0.018 4.018 6 N -0.390 5.390 7 C 0.350 3.650 8 O -0.466 6.466 9 C -0.609 4.609 10 H 0.097 0.903 11 C -0.187 4.187 12 N -0.454 5.454 13 Si 0.814 3.186 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.174 1.174 17 C 0.031 3.969 18 H 0.047 0.953 19 C -0.011 4.011 20 O -0.364 6.364 21 H 0.106 0.894 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.132 0.868 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.045 8.649 8.370 13.468 hybrid contribution 0.854 -0.128 -0.592 1.047 sum -5.190 8.521 7.778 12.650 Atomic orbital electron populations 1.21732 0.92237 1.01869 1.03296 1.22165 0.97280 0.99082 0.91955 0.88224 1.22862 0.94247 1.00295 0.97874 1.22151 0.98048 0.99443 0.82176 1.48779 1.31136 1.47844 1.11204 1.18389 0.82858 0.78427 0.85303 1.90633 1.72592 1.65782 1.17584 1.21400 1.13079 1.28222 0.98203 0.90283 1.26936 1.01032 0.96049 0.94665 1.70217 1.36838 1.29899 1.08413 0.85080 0.76315 0.78597 0.78640 1.18691 1.19721 1.17380 1.21649 0.88356 0.92426 0.94470 0.95261 1.22678 0.97776 0.93522 0.87128 1.87180 1.88344 1.36347 1.24578 0.89420 0.91977 0.93678 0.91170 0.86805 0.92917 0.92475 0.91907 0.91208 0.94865 0.78732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.16 71.98 0.66 -2.14 16 2 C -0.09 -2.29 3.06 -9.61 -0.03 -2.32 16 3 H 0.10 2.25 7.85 -2.39 -0.02 2.24 16 4 C -0.12 -3.01 6.53 31.98 0.21 -2.80 16 5 C 0.11 3.92 6.51 86.85 0.57 4.48 16 6 N -0.65 -31.79 3.08 -792.45 -2.44 -34.23 16 7 C 0.55 33.89 7.54 86.36 0.65 34.54 16 8 O -0.58 -40.92 12.35 18.63 0.23 -40.69 16 9 C -0.57 -34.42 8.98 24.83 0.22 -34.20 16 10 H 0.08 4.34 6.64 -2.91 -0.02 4.32 16 11 C 0.03 1.60 5.50 85.31 0.47 2.07 16 12 N -0.82 -52.76 11.83 21.84 0.26 -52.51 16 13 Si 0.99 43.06 29.56 68.60 2.03 45.09 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 16 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 17 C 0.14 5.48 2.89 45.29 0.13 5.61 16 18 H 0.03 1.35 7.80 -2.38 -0.02 1.34 16 19 C 0.07 2.61 6.47 71.98 0.47 3.08 16 20 O -0.56 -27.13 10.40 -126.03 -1.31 -28.44 16 21 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 24 H 0.07 1.87 8.05 -2.38 -0.02 1.85 16 25 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.22 7.14 -2.39 -0.02 2.20 16 28 H 0.27 15.76 8.29 -92.71 -0.77 14.99 16 29 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.37 13.93 9.12 -74.05 -0.68 13.26 16 Total: -1.00 -84.22 257.02 2.56 -81.66 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.45 Total: 20.80 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 3.34 Total: 8.32 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.18 Total: -86.74 kcal Atomic # 8 Polarization: -68.05 SS G_CDS: -1.08 Total: -69.13 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -84.22 2.56 -81.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226342230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.647 kcal (2) G-P(sol) polarization free energy of solvation -84.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds