Wall clock time and date at job start Sun Mar 29 2020 21:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.77873 * 2 1 4 4 C 1.55162 * 110.71786 * 236.76562 * 2 1 3 5 5 C 1.54916 * 101.57776 * 206.13691 * 4 2 1 6 6 N 1.47417 * 104.83325 * 37.00890 * 5 4 2 7 7 C 1.34780 * 125.64834 * 155.83761 * 6 5 4 8 8 O 1.21685 * 120.00233 * 180.02562 * 7 6 5 9 9 C 1.46373 * 119.99957 * 0.02562 * 7 6 5 10 10 H 1.08007 * 119.99830 * 6.47290 * 9 7 6 11 11 C 1.40045 * 120.00135 * 186.46629 * 9 7 6 12 12 N 1.30675 * 120.00232 * 184.72387 * 11 9 7 13 13 Si 1.86801 * 119.99972 * 4.72569 * 11 9 7 14 14 H 1.48496 * 109.47207 * 179.97438 * 13 11 9 15 15 H 1.48496 * 109.47147 * 299.99711 * 13 11 9 16 16 H 1.48504 * 109.47148 * 60.00022 * 13 11 9 17 17 C 1.47017 * 108.70486 * 336.09905 * 6 5 4 18 18 H 1.09003 * 109.88367 * 120.24977 * 17 6 5 19 19 C 1.53005 * 109.88447 * 241.41257 * 17 6 5 20 20 O 1.42889 * 109.47237 * 293.54671 * 19 17 6 21 21 H 1.09005 * 109.47217 * 181.77918 * 1 2 3 22 22 H 1.08998 * 109.47291 * 301.78032 * 1 2 3 23 23 H 1.09000 * 109.46980 * 61.78442 * 1 2 3 24 24 H 1.08990 * 111.00549 * 88.05999 * 4 2 1 25 25 H 1.09004 * 111.00483 * 324.20353 * 4 2 1 26 26 H 1.08997 * 110.36329 * 278.16745 * 5 4 2 27 27 H 1.08995 * 110.36285 * 155.84773 * 5 4 2 28 28 H 0.97003 * 119.99407 * 354.91348 * 12 11 9 29 29 H 1.09006 * 109.46685 * 53.55252 * 19 17 6 30 30 H 1.08997 * 109.46886 * 173.54354 * 19 17 6 31 31 H 0.96705 * 114.00234 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0789 -0.7954 -1.2139 5 6 3.4632 -1.2498 -0.6876 6 7 3.2444 -1.5508 0.7388 7 6 3.9914 -2.3848 1.4892 8 8 3.7170 -2.5588 2.6619 9 6 5.1328 -3.0812 0.8936 10 1 5.4404 -2.8491 -0.1154 11 6 5.8260 -4.0484 1.6320 12 7 6.8998 -4.6037 1.1358 13 14 5.2156 -4.5448 3.3262 14 1 6.1179 -5.5785 3.8942 15 1 5.2025 -3.3558 4.2157 16 1 3.8408 -5.0954 3.2154 17 6 2.0727 -0.7955 1.2057 18 1 1.3103 -1.4831 1.5721 19 6 2.4854 0.1694 2.3191 20 8 2.8946 -0.5755 3.4677 21 1 -0.3634 -1.0272 0.0319 22 1 -0.3634 0.5412 0.8736 23 1 -0.3633 0.4859 -0.9056 24 1 2.1849 -0.1518 -2.0871 25 1 1.4451 -1.6536 -1.4376 26 1 4.1931 -0.4479 -0.7985 27 1 3.7959 -2.1426 -1.2170 28 1 7.1752 -4.4011 0.2280 29 1 3.3130 0.7894 1.9742 30 1 1.6397 0.8053 2.5808 31 1 3.1710 -0.0268 4.2145 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226342236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:22 Heat of formation + Delta-G solvation = -102.289625 kcal Electronic energy + Delta-G solvation = -15052.706716 eV Core-core repulsion = 12526.406423 eV Total energy + Delta-G solvation = -2526.300293 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19546 -36.32357 -35.58834 -32.73803 -32.10980 -29.75129 -27.56520 -25.60889 -23.36681 -21.91050 -20.21061 -18.80322 -17.24516 -16.55450 -15.86226 -15.32099 -14.18130 -14.00216 -13.63029 -13.46208 -12.97554 -12.82617 -12.58308 -12.31370 -11.73689 -11.52192 -11.30208 -11.12323 -10.58755 -10.52682 -10.37205 -10.20549 -10.03418 -9.32039 -9.01833 -8.83207 -7.65185 -7.39063 -6.84511 -4.77278 3.70631 3.76846 4.12214 4.37250 4.49081 4.60161 4.71756 4.81015 5.05093 5.30550 5.53902 5.55638 5.64074 5.65948 5.71502 5.78332 5.84987 5.86796 6.13767 6.14704 6.18213 6.38309 6.53080 6.62918 7.17668 7.84827 7.90073 8.29398 8.36385 8.97986 9.24449 10.30544 10.46070 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.011552 C = 0.009617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.856034 B = 2423.189604 C = 2910.954202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.116 3.884 6 N -0.631 5.631 7 C 0.566 3.434 8 O -0.573 6.573 9 C -0.598 4.598 10 H 0.068 0.932 11 C 0.060 3.940 12 N -0.841 5.841 13 Si 1.129 2.871 14 H -0.326 1.326 15 H -0.278 1.278 16 H -0.293 1.293 17 C 0.146 3.854 18 H 0.067 0.933 19 C 0.070 3.930 20 O -0.520 6.520 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.275 0.725 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 10.133 -3.472 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.167 4.167 5 C -0.008 4.008 6 N -0.368 5.368 7 C 0.374 3.626 8 O -0.462 6.462 9 C -0.634 4.634 10 H 0.086 0.914 11 C -0.156 4.156 12 N -0.469 5.469 13 Si 0.963 3.037 14 H -0.259 1.259 15 H -0.205 1.205 16 H -0.220 1.220 17 C 0.041 3.959 18 H 0.085 0.915 19 C -0.010 4.010 20 O -0.322 6.322 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.695 8.556 -2.003 13.085 hybrid contribution -0.144 1.716 -1.450 2.251 sum -9.839 10.272 -3.453 14.637 Atomic orbital electron populations 1.21753 0.94305 1.02154 1.01459 1.22157 0.95804 0.99094 0.94803 0.90272 1.22881 0.97278 0.99751 0.96839 1.21921 0.95122 0.99833 0.83933 1.48395 1.30570 1.48148 1.09690 1.18268 0.82123 0.77317 0.84844 1.90226 1.73227 1.66218 1.16564 1.22055 1.14301 1.23971 1.03069 0.91403 1.27131 0.91156 0.90912 1.06415 1.70670 1.19503 1.39768 1.17000 0.82382 0.73323 0.74800 0.73232 1.25858 1.20468 1.22045 1.21331 0.89996 0.92587 0.91983 0.91461 1.22516 0.96613 0.93575 0.88313 1.87176 1.87642 1.34075 1.23270 0.92320 0.92647 0.92467 0.90794 0.90891 0.93502 0.91031 0.91481 0.94762 0.94916 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.14 37.16 0.34 -1.22 16 2 C -0.10 -1.38 3.07 -88.79 -0.27 -1.65 16 3 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 4 C -0.13 -1.81 6.53 -24.58 -0.16 -1.97 16 5 C 0.12 2.16 6.48 -2.53 -0.02 2.15 16 6 N -0.63 -14.47 3.07 -164.67 -0.50 -14.97 16 7 C 0.57 15.93 7.34 -12.99 -0.10 15.83 16 8 O -0.57 -17.21 9.34 -18.93 -0.18 -17.39 16 9 C -0.60 -17.65 9.36 -35.63 -0.33 -17.98 16 10 H 0.07 1.98 6.96 -52.48 -0.37 1.61 16 11 C 0.06 1.81 5.52 -17.37 -0.10 1.71 16 12 N -0.84 -25.24 13.65 55.55 0.76 -24.48 16 13 Si 1.13 31.28 26.00 -169.99 -4.42 26.86 16 14 H -0.33 -8.70 7.11 56.52 0.40 -8.30 16 15 H -0.28 -7.91 6.77 56.52 0.38 -7.53 16 16 H -0.29 -8.20 7.11 56.52 0.40 -7.79 16 17 C 0.15 2.76 2.89 -66.96 -0.19 2.57 16 18 H 0.07 1.39 7.78 -51.93 -0.40 0.98 16 19 C 0.07 1.24 6.47 37.16 0.24 1.48 16 20 O -0.52 -11.11 10.32 -59.37 -0.61 -11.72 16 21 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.41 7.24 -51.93 -0.38 1.03 16 28 H 0.27 7.92 8.72 -40.82 -0.36 7.56 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.35 5.75 9.12 45.56 0.42 6.17 16 LS Contribution 252.82 15.07 3.81 3.81 Total: -1.00 -35.02 252.82 -5.42 -40.44 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -3.68 Total: -3.47 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.59 Total: 0.92 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.25 Total: -39.45 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.79 Total: -29.11 kcal Atomic # 14 Polarization: 31.28 SS G_CDS: -4.42 Total: 26.86 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -35.02 -5.42 -40.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226342236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.852 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds