Wall clock time and date at job start Sun Mar 29 2020 21:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.64089 * 2 1 4 4 C 1.55160 * 110.87329 * 123.24808 * 2 1 3 5 5 C 1.54910 * 101.58212 * 82.93011 * 4 2 1 6 6 N 1.47734 * 104.90038 * 36.95259 * 5 4 2 7 7 C 1.34778 * 125.82001 * 155.98931 * 6 5 4 8 8 O 1.21690 * 120.00530 * 180.02562 * 7 6 5 9 9 C 1.46373 * 119.99815 * 0.02562 * 7 6 5 10 10 H 1.07998 * 120.00082 * 353.99353 * 9 7 6 11 11 C 1.40055 * 120.00224 * 173.99766 * 9 7 6 12 12 N 1.30671 * 119.99654 * 6.17352 * 11 9 7 13 13 Si 1.86806 * 120.00007 * 186.18241 * 11 9 7 14 14 H 1.48492 * 109.46878 * 94.98057 * 13 11 9 15 15 H 1.48500 * 109.46506 * 214.98107 * 13 11 9 16 16 H 1.48496 * 109.46791 * 334.97764 * 13 11 9 17 17 C 1.47026 * 108.53570 * 335.99410 * 6 5 4 18 18 H 1.08998 * 109.88169 * 120.42398 * 17 6 5 19 19 C 1.53000 * 109.88197 * 241.43284 * 17 6 5 20 20 O 1.42905 * 109.47201 * 293.28209 * 19 17 6 21 21 H 1.09000 * 109.47134 * 183.14774 * 1 2 3 22 22 H 1.09002 * 109.46789 * 303.14257 * 1 2 3 23 23 H 1.08999 * 109.47076 * 63.13686 * 1 2 3 24 24 H 1.08998 * 111.00337 * 201.00268 * 4 2 1 25 25 H 1.09001 * 110.99931 * 324.85766 * 4 2 1 26 26 H 1.08994 * 110.36798 * 155.85141 * 5 4 2 27 27 H 1.08999 * 110.36791 * 278.06073 * 5 4 2 28 28 H 0.97005 * 119.99653 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.47208 * 53.27914 * 19 17 6 30 30 H 1.08995 * 109.47042 * 173.28144 * 19 17 6 31 31 H 0.96692 * 113.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0829 -0.7949 1.2124 5 6 2.0191 -2.2502 0.6854 6 7 2.3748 -2.1521 -0.7451 7 6 2.8872 -3.1438 -1.5003 8 8 3.1427 -2.9455 -2.6734 9 6 3.1365 -4.4596 -0.9093 10 1 3.0020 -4.6092 0.1517 11 6 3.5495 -5.5244 -1.7199 12 7 3.8287 -5.3167 -2.9794 13 14 3.7009 -7.2417 -1.0004 14 1 2.4483 -7.9974 -1.2554 15 1 4.8425 -7.9462 -1.6374 16 1 3.9325 -7.1465 0.4633 17 6 2.0759 -0.7891 -1.2086 18 1 2.9850 -0.3163 -1.5801 19 6 1.0233 -0.8359 -2.3180 20 8 1.5755 -1.4728 -3.4720 21 1 -0.3633 -1.0261 0.0564 22 1 -0.3633 0.5619 0.8605 23 1 -0.3633 0.4644 -0.9168 24 1 3.1097 -0.5044 1.4346 25 1 1.4445 -0.6677 2.0868 26 1 2.7381 -2.8766 1.2133 27 1 1.0121 -2.6512 0.7996 28 1 4.1151 -6.0542 -3.5407 29 1 0.1561 -1.3986 -1.9725 30 1 0.7196 0.1791 -2.5736 31 1 0.9623 -1.5372 -4.2168 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226342242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:25 Heat of formation + Delta-G solvation = -82.237050 kcal Electronic energy + Delta-G solvation = -15080.729655 eV Core-core repulsion = 12555.298907 eV Total energy + Delta-G solvation = -2525.430748 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.05243 -35.76706 -35.33399 -32.36986 -31.55227 -29.56208 -27.06171 -25.46014 -24.19337 -21.69384 -19.78738 -18.15507 -16.75389 -16.26351 -15.75199 -15.15562 -14.14913 -13.81290 -13.69034 -13.20295 -12.91496 -12.54784 -12.15317 -11.59905 -11.54876 -11.43401 -11.08419 -10.91685 -10.61318 -10.51803 -10.37725 -10.13121 -9.99410 -9.94905 -9.05094 -8.71867 -7.28652 -6.96561 -6.04775 -4.48035 3.19606 3.26312 3.29793 4.17308 4.65444 4.73030 4.84106 4.97721 5.16131 5.47307 5.69803 5.73302 5.82959 5.84724 5.90845 5.97705 6.00790 6.15463 6.29027 6.32456 6.37444 6.57496 6.71567 6.83548 7.53186 7.56141 8.26821 8.56296 8.59657 9.16022 9.72076 10.75297 11.01143 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.010655 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.157528 B = 2627.332261 C = 3127.233759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.077 0.923 4 C -0.130 4.130 5 C 0.117 3.883 6 N -0.637 5.637 7 C 0.566 3.434 8 O -0.532 6.532 9 C -0.544 4.544 10 H 0.065 0.935 11 C 0.088 3.912 12 N -0.769 5.769 13 Si 0.903 3.097 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.148 3.852 18 H 0.059 0.941 19 C 0.070 3.930 20 O -0.518 6.518 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.036 0.964 30 H 0.028 0.972 31 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 7.637 6.452 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.168 4.168 5 C -0.007 4.007 6 N -0.379 5.379 7 C 0.370 3.630 8 O -0.410 6.410 9 C -0.581 4.581 10 H 0.083 0.917 11 C -0.131 4.131 12 N -0.399 5.399 13 Si 0.728 3.272 14 H -0.200 1.200 15 H -0.206 1.206 16 H -0.190 1.190 17 C 0.042 3.958 18 H 0.077 0.923 19 C -0.009 4.009 20 O -0.319 6.319 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.680 7.538 5.922 11.143 hybrid contribution -0.556 -0.778 0.149 0.968 sum -6.236 6.760 6.071 11.020 Atomic orbital electron populations 1.21856 0.94891 1.02167 1.01208 1.22126 0.95836 0.98694 0.95102 0.90427 1.22857 1.00949 0.96308 0.96726 1.21918 0.99221 0.94871 0.84721 1.48998 1.69601 1.10109 1.09194 1.18043 0.77020 0.82626 0.85277 1.90687 1.53593 1.81042 1.15638 1.20899 1.48828 0.93358 0.94998 0.91687 1.25673 0.93071 0.99900 0.94455 1.70044 1.32583 1.31631 1.05618 0.86437 0.78138 0.82764 0.79851 1.19974 1.20563 1.19017 1.21150 0.96301 0.86508 0.91813 0.92252 1.22610 0.96056 0.94016 0.88258 1.87232 1.40293 1.81396 1.22960 0.92122 0.92930 0.92504 0.91175 0.91008 0.91433 0.93817 0.92379 0.94547 0.95403 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.98 37.16 0.30 -1.53 16 2 C -0.10 -1.46 3.54 -88.78 -0.31 -1.77 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -1.91 6.58 -24.58 -0.16 -2.07 16 5 C 0.12 2.24 6.26 -2.36 -0.01 2.22 16 6 N -0.64 -15.25 3.08 -164.41 -0.51 -15.75 16 7 C 0.57 16.86 7.52 -12.99 -0.10 16.76 16 8 O -0.53 -17.68 12.31 -18.93 -0.23 -17.91 16 9 C -0.54 -15.96 9.00 -35.63 -0.32 -16.28 16 10 H 0.06 1.77 6.62 -52.49 -0.35 1.42 16 11 C 0.09 2.53 5.49 -17.36 -0.10 2.44 16 12 N -0.77 -23.76 11.85 55.55 0.66 -23.10 16 13 Si 0.90 20.82 29.56 -169.99 -5.03 15.79 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 C 0.15 3.00 3.22 -66.95 -0.22 2.78 16 18 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 19 C 0.07 1.36 5.30 37.16 0.20 1.55 16 20 O -0.52 -12.11 10.33 -59.36 -0.61 -12.72 16 21 H 0.06 0.85 7.02 -51.93 -0.36 0.48 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 26 H 0.07 1.33 7.10 -51.93 -0.37 0.96 16 27 H 0.04 0.80 7.71 -51.93 -0.40 0.40 16 28 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 29 H 0.04 0.69 6.97 -51.93 -0.36 0.33 16 30 H 0.03 0.45 7.41 -51.93 -0.39 0.06 16 31 H 0.35 6.42 9.12 45.56 0.42 6.83 16 LS Contribution 250.76 15.07 3.78 3.78 Total: -1.00 -36.38 250.76 -6.06 -42.45 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.40 Total: 3.37 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.73 Total: 4.10 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.15 Total: -38.85 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.85 Total: -30.63 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -36.38 -6.06 -42.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226342242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.791 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds