Wall clock time and date at job start Sun Mar 29 2020 21:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.64089 * 2 1 4 4 C 1.55160 * 110.87329 * 123.24808 * 2 1 3 5 5 C 1.54910 * 101.58212 * 82.93011 * 4 2 1 6 6 N 1.47734 * 104.90038 * 36.95259 * 5 4 2 7 7 C 1.34778 * 125.82001 * 155.98931 * 6 5 4 8 8 O 1.21690 * 120.00530 * 180.02562 * 7 6 5 9 9 C 1.46373 * 119.99815 * 0.02562 * 7 6 5 10 10 H 1.07998 * 120.00082 * 353.99353 * 9 7 6 11 11 C 1.40055 * 120.00224 * 173.99766 * 9 7 6 12 12 N 1.30671 * 119.99654 * 6.17352 * 11 9 7 13 13 Si 1.86806 * 120.00007 * 186.18241 * 11 9 7 14 14 H 1.48492 * 109.46878 * 94.98057 * 13 11 9 15 15 H 1.48500 * 109.46506 * 214.98107 * 13 11 9 16 16 H 1.48496 * 109.46791 * 334.97764 * 13 11 9 17 17 C 1.47026 * 108.53570 * 335.99410 * 6 5 4 18 18 H 1.08998 * 109.88169 * 120.42398 * 17 6 5 19 19 C 1.53000 * 109.88197 * 241.43284 * 17 6 5 20 20 O 1.42905 * 109.47201 * 293.28209 * 19 17 6 21 21 H 1.09000 * 109.47134 * 183.14774 * 1 2 3 22 22 H 1.09002 * 109.46789 * 303.14257 * 1 2 3 23 23 H 1.08999 * 109.47076 * 63.13686 * 1 2 3 24 24 H 1.08998 * 111.00337 * 201.00268 * 4 2 1 25 25 H 1.09001 * 110.99931 * 324.85766 * 4 2 1 26 26 H 1.08994 * 110.36798 * 155.85141 * 5 4 2 27 27 H 1.08999 * 110.36791 * 278.06073 * 5 4 2 28 28 H 0.97005 * 119.99653 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.47208 * 53.27914 * 19 17 6 30 30 H 1.08995 * 109.47042 * 173.28144 * 19 17 6 31 31 H 0.96692 * 113.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0829 -0.7949 1.2124 5 6 2.0191 -2.2502 0.6854 6 7 2.3748 -2.1521 -0.7451 7 6 2.8872 -3.1438 -1.5003 8 8 3.1427 -2.9455 -2.6734 9 6 3.1365 -4.4596 -0.9093 10 1 3.0020 -4.6092 0.1517 11 6 3.5495 -5.5244 -1.7199 12 7 3.8287 -5.3167 -2.9794 13 14 3.7009 -7.2417 -1.0004 14 1 2.4483 -7.9974 -1.2554 15 1 4.8425 -7.9462 -1.6374 16 1 3.9325 -7.1465 0.4633 17 6 2.0759 -0.7891 -1.2086 18 1 2.9850 -0.3163 -1.5801 19 6 1.0233 -0.8359 -2.3180 20 8 1.5755 -1.4728 -3.4720 21 1 -0.3633 -1.0261 0.0564 22 1 -0.3633 0.5619 0.8605 23 1 -0.3633 0.4644 -0.9168 24 1 3.1097 -0.5044 1.4346 25 1 1.4445 -0.6677 2.0868 26 1 2.7381 -2.8766 1.2133 27 1 1.0121 -2.6512 0.7996 28 1 4.1151 -6.0542 -3.5407 29 1 0.1561 -1.3986 -1.9725 30 1 0.7196 0.1791 -2.5736 31 1 0.9623 -1.5372 -4.2168 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226342242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:24 Heat of formation + Delta-G solvation = -110.149120 kcal Electronic energy + Delta-G solvation = -15081.940014 eV Core-core repulsion = 12555.298907 eV Total energy + Delta-G solvation = -2526.641107 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65028 -37.82871 -37.00812 -34.55899 -33.20340 -31.08850 -28.83523 -27.23022 -25.65992 -23.40987 -21.40704 -19.79640 -18.51659 -18.10583 -17.58198 -16.98328 -15.97077 -15.41430 -15.23434 -14.70378 -14.60694 -14.14131 -13.52903 -13.32578 -13.19349 -12.92951 -12.84901 -12.71263 -12.33722 -12.32571 -11.94906 -11.66025 -11.50044 -11.31259 -10.88320 -10.67797 -9.54799 -8.89475 -8.21316 -6.75736 1.37487 1.39888 1.54520 2.25130 2.56930 2.94976 3.42910 3.67586 3.72505 3.98835 4.19963 4.32770 4.42406 4.44370 4.56158 4.64491 4.76143 4.87153 5.03880 5.07830 5.19834 5.25174 5.31177 5.38304 5.52549 5.75636 6.13236 6.54850 6.93742 7.10759 7.65930 8.61328 8.82991 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.010655 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.157528 B = 2627.332261 C = 3127.233759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 H 0.105 0.895 4 C -0.116 4.116 5 C 0.108 3.892 6 N -0.648 5.648 7 C 0.547 3.453 8 O -0.583 6.583 9 C -0.573 4.573 10 H 0.078 0.922 11 C 0.028 3.972 12 N -0.823 5.823 13 Si 0.993 3.007 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.250 1.250 17 C 0.133 3.867 18 H 0.026 0.974 19 C 0.069 3.931 20 O -0.562 6.562 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.271 0.729 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 8.106 8.861 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.123 0.877 4 C -0.154 4.154 5 C -0.016 4.016 6 N -0.387 5.387 7 C 0.351 3.649 8 O -0.465 6.465 9 C -0.610 4.610 10 H 0.097 0.903 11 C -0.186 4.186 12 N -0.453 5.453 13 Si 0.813 3.187 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.173 1.173 17 C 0.028 3.972 18 H 0.045 0.955 19 C -0.009 4.009 20 O -0.366 6.366 21 H 0.062 0.938 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.992 8.054 8.383 13.566 hybrid contribution -0.176 -0.831 -0.600 1.040 sum -7.167 7.224 7.783 12.811 Atomic orbital electron populations 1.21841 0.92766 1.01847 1.03221 1.22163 0.97418 0.98950 0.91874 0.87660 1.22841 1.02160 0.92486 0.97875 1.22182 0.99105 0.98236 0.82030 1.48761 1.68269 1.10602 1.11050 1.18378 0.77172 0.84149 0.85248 1.90634 1.55722 1.82431 1.17717 1.21393 1.49492 0.94213 0.95916 0.90347 1.26920 0.91786 1.05233 0.94640 1.70224 1.33721 1.33639 1.07715 0.85080 0.78575 0.75550 0.79502 1.18846 1.19704 1.17328 1.21547 0.95765 0.85138 0.94733 0.95548 1.22765 0.95467 0.95816 0.86882 1.87192 1.42308 1.82353 1.24742 0.93753 0.89536 0.91771 0.91060 0.86863 0.92654 0.92937 0.91915 0.94386 0.91371 0.78880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 7.98 71.98 0.57 -2.39 16 2 C -0.09 -2.25 3.54 -9.60 -0.03 -2.28 16 3 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.12 -3.02 6.58 31.99 0.21 -2.81 16 5 C 0.11 4.00 6.26 86.80 0.54 4.54 16 6 N -0.65 -31.49 3.08 -792.30 -2.44 -33.93 16 7 C 0.55 33.84 7.52 86.36 0.65 34.49 16 8 O -0.58 -40.79 12.31 18.75 0.23 -40.55 16 9 C -0.57 -34.49 9.00 24.83 0.22 -34.26 16 10 H 0.08 4.32 6.62 -2.91 -0.02 4.30 16 11 C 0.03 1.66 5.49 85.31 0.47 2.13 16 12 N -0.82 -52.65 11.85 21.84 0.26 -52.40 16 13 Si 0.99 43.07 29.56 68.60 2.03 45.10 16 14 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 17 C 0.13 5.37 3.22 45.34 0.15 5.52 16 18 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 19 C 0.07 2.66 5.30 71.98 0.38 3.04 16 20 O -0.56 -27.29 10.33 -125.91 -1.30 -28.59 16 21 H 0.04 1.09 7.02 -2.39 -0.02 1.08 16 22 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.28 6.56 -2.39 -0.02 1.26 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.11 2.10 8.04 -2.39 -0.02 2.08 16 26 H 0.05 2.15 7.10 -2.39 -0.02 2.13 16 27 H 0.05 1.85 7.71 -2.39 -0.02 1.83 16 28 H 0.27 15.73 8.29 -92.70 -0.77 14.96 16 29 H 0.04 1.43 6.97 -2.39 -0.02 1.41 16 30 H 0.07 2.04 7.41 -2.39 -0.02 2.02 16 31 H 0.37 14.00 9.12 -74.06 -0.68 13.33 16 Total: -1.00 -84.02 250.76 2.40 -81.62 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.46 Total: 20.77 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 3.16 Total: 7.98 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.18 Total: -86.33 kcal Atomic # 8 Polarization: -68.07 SS G_CDS: -1.07 Total: -69.14 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -84.02 2.40 -81.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226342242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.532 kcal (2) G-P(sol) polarization free energy of solvation -84.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds