Wall clock time and date at job start Sun Mar 29 2020 22:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53362 * 1 3 3 C 1.54337 * 107.48035 * 2 1 4 4 C 1.53089 * 109.25825 * 116.65065 * 2 1 3 5 5 N 1.46917 * 108.95769 * 81.20121 * 4 2 1 6 6 C 1.36876 * 121.36383 * 234.36064 * 5 4 2 7 7 H 1.08003 * 120.00203 * 152.88586 * 6 5 4 8 8 C 1.38812 * 120.00283 * 332.88537 * 6 5 4 9 9 N 1.31622 * 120.00027 * 342.66134 * 8 6 5 10 10 Si 1.86804 * 120.00030 * 162.38395 * 8 6 5 11 11 H 1.48503 * 109.47018 * 89.99962 * 10 8 6 12 12 H 1.48492 * 109.47176 * 210.00349 * 10 8 6 13 13 H 1.48507 * 109.46828 * 330.00180 * 10 8 6 14 14 C 1.46907 * 117.26181 * 54.74673 * 5 4 2 15 15 C 1.53085 * 108.99140 * 305.32613 * 14 5 4 16 16 C 1.53368 * 109.26008 * 278.63827 * 15 14 5 17 17 C 1.54336 * 107.73953 * 162.17351 * 15 14 5 18 18 O 1.40853 * 111.21083 * 241.41718 * 2 1 3 19 19 H 1.09005 * 109.47220 * 303.34869 * 1 2 3 20 20 H 1.09005 * 109.47114 * 63.34696 * 1 2 3 21 21 H 1.08991 * 109.47265 * 183.34541 * 1 2 3 22 22 H 1.08998 * 109.46839 * 177.63913 * 3 2 1 23 23 H 1.08996 * 109.46790 * 297.64105 * 3 2 1 24 24 H 1.08993 * 109.46988 * 57.64092 * 3 2 1 25 25 H 1.09131 * 109.64603 * 321.18915 * 4 2 1 26 26 H 1.09140 * 109.64853 * 201.21483 * 4 2 1 27 27 H 0.96995 * 119.99722 * 180.02562 * 9 8 6 28 28 H 1.09140 * 109.65630 * 65.36229 * 14 5 4 29 29 H 1.09148 * 109.64509 * 185.31604 * 14 5 4 30 30 H 1.08998 * 109.47137 * 184.79349 * 16 15 14 31 31 H 1.08995 * 109.47192 * 304.79473 * 16 15 14 32 32 H 1.09007 * 109.46813 * 64.79704 * 16 15 14 33 33 H 1.08995 * 109.47618 * 297.94466 * 17 15 14 34 34 H 1.08994 * 109.47727 * 57.95523 * 17 15 14 35 35 H 1.09011 * 109.46873 * 177.94930 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5336 0.0000 0.0000 3 6 1.9972 1.4721 0.0000 4 6 2.0385 -0.6483 1.2917 5 7 1.9953 -2.1090 1.1411 6 6 1.3326 -2.8987 2.0415 7 1 0.9321 -3.8525 1.7312 8 6 1.1752 -2.4737 3.3536 9 7 1.9306 -1.5053 3.8268 10 14 -0.1140 -3.2710 4.4454 11 1 0.4859 -4.4297 5.1545 12 1 -0.6019 -2.2811 5.4389 13 1 -1.2507 -3.7360 3.6104 14 6 2.6999 -2.6880 -0.0106 15 6 2.1914 -2.0221 -1.2918 16 6 0.8727 -2.6808 -1.7152 17 6 3.2243 -2.2953 -2.4056 18 8 2.0432 -0.6282 -1.1531 19 1 -0.3634 0.5650 0.8585 20 1 -0.3633 0.4610 -0.9185 21 1 -0.3633 -1.0258 0.0600 22 1 3.0857 1.5102 0.0423 23 1 1.6516 1.9618 -0.9104 24 1 1.5817 1.9838 0.8680 25 1 1.4035 -0.3464 2.1263 26 1 3.0642 -0.3295 1.4857 27 1 1.8209 -1.2086 4.7437 28 1 3.7729 -2.5163 0.0912 29 1 2.5099 -3.7619 -0.0552 30 1 0.5512 -2.2684 -2.6716 31 1 1.0191 -3.7563 -1.8141 32 1 0.1104 -2.4856 -0.9608 33 1 4.1789 -1.8445 -2.1345 34 1 3.3518 -3.3709 -2.5271 35 1 2.8715 -1.8632 -3.3422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226425363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:46 Heat of formation + Delta-G solvation = -30.520412 kcal Electronic energy + Delta-G solvation = -15808.082858 eV Core-core repulsion = 13420.727806 eV Total energy + Delta-G solvation = -2387.355052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.04439 -34.56146 -34.40809 -31.38385 -30.23858 -27.09265 -26.14609 -25.63170 -25.54034 -21.65621 -21.05426 -17.63225 -16.74179 -15.65404 -14.90079 -14.35147 -14.07233 -13.70446 -13.54870 -12.92942 -12.66735 -12.14318 -11.86977 -11.62914 -11.57969 -11.43026 -11.35286 -11.29680 -10.95732 -10.86759 -10.53869 -10.31955 -10.15592 -9.95862 -9.73507 -9.15012 -8.82444 -8.43340 -6.64041 -5.80560 -3.23727 3.35032 3.42309 3.44609 4.15372 4.47962 5.32019 5.41473 5.52336 5.58390 5.71681 5.77863 5.89339 6.04013 6.07365 6.15030 6.22227 6.25708 6.35028 6.40478 6.47051 6.50925 6.60224 6.71053 6.81830 6.87562 6.95242 7.06526 7.20926 7.55781 7.75320 8.39080 8.65449 9.16214 9.79306 10.38692 11.26784 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.012221 C = 0.010649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.535457 B = 2290.509018 C = 2628.686690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 C -0.135 4.135 4 C 0.147 3.853 5 N -0.587 5.587 6 C -0.248 4.248 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.279 1.279 14 C 0.119 3.881 15 C 0.115 3.885 16 C -0.163 4.163 17 C -0.137 4.137 18 O -0.388 6.388 19 H 0.055 0.945 20 H 0.041 0.959 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.022 0.978 27 H 0.254 0.746 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 1.645 -8.546 8.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 C -0.192 4.192 4 C 0.021 3.979 5 N -0.310 5.310 6 C -0.378 4.378 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.205 1.205 14 C -0.007 4.007 15 C 0.074 3.926 16 C -0.220 4.220 17 C -0.195 4.195 18 O -0.308 6.308 19 H 0.074 0.926 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.630 1.795 -8.481 8.691 hybrid contribution -0.730 -0.579 0.932 1.318 sum -1.360 1.216 -7.549 7.766 Atomic orbital electron populations 1.22367 0.96737 1.02405 1.00100 1.21907 0.92347 0.91409 0.87950 1.22067 1.01310 0.94798 1.01068 1.21479 0.99199 0.83345 0.93921 1.43834 1.59625 1.01587 1.25948 1.19110 1.27671 1.02140 0.88839 0.91623 1.25025 0.99055 0.99200 0.96315 1.70020 1.38298 1.31223 1.15080 0.86323 0.81771 0.78536 0.80334 1.21360 1.21499 1.20462 1.21608 0.94666 0.96894 0.87567 1.21595 0.93978 0.81506 0.95550 1.22416 0.99065 0.99650 1.00874 1.22102 0.98703 1.00772 0.97906 1.86007 1.84195 1.20640 1.39925 0.92602 0.93948 0.91856 0.92715 0.93109 0.91652 0.88387 0.96040 0.93576 0.95961 0.92088 0.93543 0.92746 0.91672 0.92572 0.91832 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.36 37.34 0.31 -2.76 16 2 C 0.10 2.14 1.17 -89.69 -0.11 2.04 16 3 C -0.13 -2.35 8.58 37.86 0.33 -2.03 16 4 C 0.15 3.58 4.26 -3.77 -0.02 3.56 16 5 N -0.59 -14.93 2.99 -172.25 -0.52 -15.44 16 6 C -0.25 -6.80 9.66 -15.09 -0.15 -6.95 16 7 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 8 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 9 N -0.90 -26.09 11.17 55.49 0.62 -25.47 16 10 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.12 2.61 5.41 -3.78 -0.02 2.59 16 15 C 0.11 2.18 1.17 -89.69 -0.11 2.08 16 16 C -0.16 -2.87 8.49 37.35 0.32 -2.55 16 17 C -0.14 -2.12 8.57 37.86 0.32 -1.80 16 18 O -0.39 -7.93 8.81 -34.01 -0.30 -8.23 16 19 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 20 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.06 1.34 6.14 -51.93 -0.32 1.02 16 22 H 0.05 0.95 8.10 -51.93 -0.42 0.52 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.10 2.62 5.83 -51.85 -0.30 2.32 16 26 H 0.02 0.56 7.96 -51.85 -0.41 0.15 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.02 0.50 7.98 -51.85 -0.41 0.09 16 29 H 0.06 1.28 7.71 -51.85 -0.40 0.88 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 32 H 0.06 1.29 6.03 -51.93 -0.31 0.97 16 33 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -29.22 273.57 -6.23 -35.45 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.93 Total: -1.20 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 0.80 Total: -5.82 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.10 Total: -40.91 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.30 Total: -8.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.22 -6.23 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226425363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.930 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds