Wall clock time and date at job start Sun Mar 29 2020 22:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53362 * 1 3 3 C 1.54337 * 107.48035 * 2 1 4 4 C 1.53089 * 109.25825 * 116.65065 * 2 1 3 5 5 N 1.46917 * 108.95769 * 81.20121 * 4 2 1 6 6 C 1.36876 * 121.36383 * 234.36064 * 5 4 2 7 7 H 1.08003 * 120.00203 * 152.88586 * 6 5 4 8 8 C 1.38812 * 120.00283 * 332.88537 * 6 5 4 9 9 N 1.31622 * 120.00027 * 342.66134 * 8 6 5 10 10 Si 1.86804 * 120.00030 * 162.38395 * 8 6 5 11 11 H 1.48503 * 109.47018 * 89.99962 * 10 8 6 12 12 H 1.48492 * 109.47176 * 210.00349 * 10 8 6 13 13 H 1.48507 * 109.46828 * 330.00180 * 10 8 6 14 14 C 1.46907 * 117.26181 * 54.74673 * 5 4 2 15 15 C 1.53085 * 108.99140 * 305.32613 * 14 5 4 16 16 C 1.53368 * 109.26008 * 278.63827 * 15 14 5 17 17 C 1.54336 * 107.73953 * 162.17351 * 15 14 5 18 18 O 1.40853 * 111.21083 * 241.41718 * 2 1 3 19 19 H 1.09005 * 109.47220 * 303.34869 * 1 2 3 20 20 H 1.09005 * 109.47114 * 63.34696 * 1 2 3 21 21 H 1.08991 * 109.47265 * 183.34541 * 1 2 3 22 22 H 1.08998 * 109.46839 * 177.63913 * 3 2 1 23 23 H 1.08996 * 109.46790 * 297.64105 * 3 2 1 24 24 H 1.08993 * 109.46988 * 57.64092 * 3 2 1 25 25 H 1.09131 * 109.64603 * 321.18915 * 4 2 1 26 26 H 1.09140 * 109.64853 * 201.21483 * 4 2 1 27 27 H 0.96995 * 119.99722 * 180.02562 * 9 8 6 28 28 H 1.09140 * 109.65630 * 65.36229 * 14 5 4 29 29 H 1.09148 * 109.64509 * 185.31604 * 14 5 4 30 30 H 1.08998 * 109.47137 * 184.79349 * 16 15 14 31 31 H 1.08995 * 109.47192 * 304.79473 * 16 15 14 32 32 H 1.09007 * 109.46813 * 64.79704 * 16 15 14 33 33 H 1.08995 * 109.47618 * 297.94466 * 17 15 14 34 34 H 1.08994 * 109.47727 * 57.95523 * 17 15 14 35 35 H 1.09011 * 109.46873 * 177.94930 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5336 0.0000 0.0000 3 6 1.9972 1.4721 0.0000 4 6 2.0385 -0.6483 1.2917 5 7 1.9953 -2.1090 1.1411 6 6 1.3326 -2.8987 2.0415 7 1 0.9321 -3.8525 1.7312 8 6 1.1752 -2.4737 3.3536 9 7 1.9306 -1.5053 3.8268 10 14 -0.1140 -3.2710 4.4454 11 1 0.4859 -4.4297 5.1545 12 1 -0.6019 -2.2811 5.4389 13 1 -1.2507 -3.7360 3.6104 14 6 2.6999 -2.6880 -0.0106 15 6 2.1914 -2.0221 -1.2918 16 6 0.8727 -2.6808 -1.7152 17 6 3.2243 -2.2953 -2.4056 18 8 2.0432 -0.6282 -1.1531 19 1 -0.3634 0.5650 0.8585 20 1 -0.3633 0.4610 -0.9185 21 1 -0.3633 -1.0258 0.0600 22 1 3.0857 1.5102 0.0423 23 1 1.6516 1.9618 -0.9104 24 1 1.5817 1.9838 0.8680 25 1 1.4035 -0.3464 2.1263 26 1 3.0642 -0.3295 1.4857 27 1 1.8209 -1.2086 4.7437 28 1 3.7729 -2.5163 0.0912 29 1 2.5099 -3.7619 -0.0552 30 1 0.5512 -2.2684 -2.6716 31 1 1.0191 -3.7563 -1.8141 32 1 0.1104 -2.4856 -0.9608 33 1 4.1789 -1.8445 -2.1345 34 1 3.3518 -3.3709 -2.5271 35 1 2.8715 -1.8632 -3.3422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226425363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:46 Heat of formation + Delta-G solvation = -48.110175 kcal Electronic energy + Delta-G solvation = -15808.845608 eV Core-core repulsion = 13420.727806 eV Total energy + Delta-G solvation = -2388.117801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68431 -36.40179 -36.01777 -33.30211 -31.90272 -28.53369 -27.60896 -27.53733 -27.29043 -23.56141 -22.58706 -19.38244 -18.69333 -17.38525 -16.65127 -16.14502 -15.62177 -15.48072 -15.29413 -14.67493 -14.21043 -13.66399 -13.30197 -13.21306 -13.14121 -12.94842 -12.81630 -12.76320 -12.69644 -12.66603 -12.29526 -12.26996 -12.00620 -11.58827 -11.43007 -10.91317 -10.64990 -10.26225 -8.66401 -7.89507 -5.36655 1.43609 1.45502 1.55046 2.44704 2.66837 3.23953 3.61376 4.01159 4.07676 4.21682 4.26935 4.28354 4.46259 4.67633 4.79149 4.82734 4.85306 4.92217 4.96506 4.99839 5.03436 5.06722 5.15652 5.24899 5.28263 5.38144 5.46122 5.54059 5.59060 5.63168 6.32288 7.01872 7.11679 7.76845 8.33129 9.15422 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.012221 C = 0.010649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.535457 B = 2290.509018 C = 2628.686690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 C -0.129 4.129 4 C 0.156 3.844 5 N -0.604 5.604 6 C -0.258 4.258 7 H 0.067 0.933 8 C -0.048 4.048 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.271 1.271 14 C 0.115 3.885 15 C 0.108 3.892 16 C -0.155 4.155 17 C -0.129 4.129 18 O -0.391 6.391 19 H 0.056 0.944 20 H 0.067 0.933 21 H 0.041 0.959 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.070 0.930 26 H -0.008 1.008 27 H 0.251 0.749 28 H 0.011 0.989 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 1.472 -10.176 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 C -0.187 4.187 4 C 0.030 3.970 5 N -0.327 5.327 6 C -0.388 4.388 7 H 0.084 0.916 8 C -0.243 4.243 9 N -0.580 5.580 10 Si 0.793 3.207 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.196 1.196 14 C -0.011 4.011 15 C 0.068 3.932 16 C -0.213 4.213 17 C -0.187 4.187 18 O -0.311 6.311 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.010 0.990 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.359 1.612 -10.143 10.360 hybrid contribution -0.449 -0.568 1.418 1.592 sum -1.808 1.044 -8.725 8.971 Atomic orbital electron populations 1.22275 0.95723 1.01353 1.01426 1.21870 0.93120 0.92667 0.85898 1.22035 1.01190 0.92804 1.02641 1.21316 0.96915 0.83414 0.95402 1.44062 1.60054 1.02003 1.26601 1.19404 1.27566 1.02362 0.89431 0.91567 1.25764 1.00868 1.00068 0.97614 1.70172 1.39847 1.32789 1.15178 0.85319 0.79484 0.77482 0.78448 1.21067 1.21695 1.19557 1.21803 0.93835 0.97472 0.87977 1.21792 0.95798 0.80669 0.94957 1.22344 0.97357 1.00685 1.00896 1.22074 0.97234 1.02379 0.97008 1.86018 1.84302 1.21462 1.39347 0.92477 0.91444 0.93969 0.93043 0.90700 0.90932 0.91201 0.99036 0.93969 0.97106 0.91658 0.91518 0.91182 0.94234 0.92955 0.89694 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 8.36 72.10 0.60 -5.04 16 2 C 0.11 4.23 1.17 -10.19 -0.01 4.22 16 3 C -0.13 -4.31 8.58 72.44 0.62 -3.69 16 4 C 0.16 7.78 4.26 86.33 0.37 8.15 16 5 N -0.60 -31.17 2.99 -698.87 -2.09 -33.27 16 6 C -0.26 -14.30 9.66 84.04 0.81 -13.49 16 7 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 8 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 9 N -0.93 -55.46 11.17 21.65 0.24 -55.22 16 10 Si 0.96 44.91 29.59 68.60 2.03 46.94 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.12 5.01 5.41 86.33 0.47 5.47 16 15 C 0.11 3.93 1.17 -10.19 -0.01 3.92 16 16 C -0.16 -5.12 8.49 72.11 0.61 -4.51 16 17 C -0.13 -3.62 8.57 72.44 0.62 -3.00 16 18 O -0.39 -15.33 8.81 -144.61 -1.27 -16.61 16 19 H 0.06 2.09 8.13 -2.38 -0.02 2.07 16 20 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 21 H 0.04 1.75 6.14 -2.39 -0.01 1.74 16 22 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 3.87 5.83 -2.32 -0.01 3.85 16 26 H -0.01 -0.46 7.96 -2.31 -0.02 -0.48 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.01 0.50 7.98 -2.31 -0.02 0.48 16 29 H 0.06 2.71 7.71 -2.31 -0.02 2.70 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.05 8.03 -2.39 -0.02 2.03 16 32 H 0.04 1.50 6.03 -2.38 -0.01 1.49 16 33 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -62.87 273.57 4.44 -58.43 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.04 Total: 9.94 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.50 Total: -10.22 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -1.85 Total: -88.48 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.27 Total: -16.61 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -62.87 4.44 -58.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226425363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.324 kcal (2) G-P(sol) polarization free energy of solvation -62.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds