Wall clock time and date at job start Sun Mar 29 2020 22:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46895 * 111.00014 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47305 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46988 * 305.00216 * 12 11 10 14 14 C 1.52997 * 109.46888 * 64.99606 * 12 11 10 15 15 C 1.53003 * 109.46888 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47327 * 300.00505 * 15 14 12 17 17 C 1.52992 * 109.47425 * 60.00213 * 16 15 14 18 18 H 1.08995 * 109.47531 * 59.99692 * 17 16 15 19 19 O 1.42901 * 109.47496 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47327 * 185.00112 * 12 11 10 21 21 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.00903 * 110.99790 * 303.95735 * 10 9 7 25 25 H 1.08999 * 109.47406 * 299.99931 * 11 10 9 26 26 H 1.09006 * 109.47349 * 60.00253 * 11 10 9 27 27 H 1.08995 * 109.47838 * 300.00364 * 14 12 11 28 28 H 1.09001 * 109.46808 * 60.00499 * 14 12 11 29 29 H 1.09007 * 109.46898 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.46988 * 60.00610 * 15 14 12 31 31 H 1.09001 * 109.47172 * 299.99992 * 16 15 14 32 32 H 1.09003 * 109.46965 * 180.02562 * 16 15 14 33 33 H 0.96697 * 113.99807 * 300.00118 * 19 17 16 34 34 H 1.09001 * 109.47172 * 299.99992 * 20 12 11 35 35 H 1.09002 * 109.47051 * 60.00526 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0013 -2.5790 -0.0106 11 6 5.4697 -2.6181 -0.0163 12 6 5.9411 -4.0737 -0.0218 13 1 5.4955 -4.6031 0.8204 14 6 5.5133 -4.7433 -1.3292 15 6 5.9841 -6.1991 -1.3344 16 6 7.5087 -6.2424 -1.2143 17 6 7.9366 -5.5729 0.0931 18 1 7.4906 -6.1019 0.9353 19 8 9.3605 -5.6139 0.2057 20 6 7.4658 -4.1165 0.0981 21 1 -0.4850 0.8400 -0.0004 22 1 3.8713 -0.6783 -0.8962 23 1 3.8786 -0.6819 0.8837 24 1 3.6290 -3.0968 0.7713 25 1 5.8433 -2.1123 -0.9066 26 1 5.8500 -2.1160 0.8734 27 1 4.4271 -4.7129 -1.4146 28 1 5.9589 -4.2139 -2.1713 29 1 5.6797 -6.6760 -2.2661 30 1 5.5381 -6.7282 -0.4923 31 1 7.9548 -5.7133 -2.0564 32 1 7.8442 -7.2795 -1.2185 33 1 9.7292 -6.5078 0.2090 34 1 7.9114 -3.5870 -0.7441 35 1 7.7705 -3.6395 1.0296 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227751443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:42 Heat of formation + Delta-G solvation = -102.814441 kcal Electronic energy + Delta-G solvation = -14341.487718 eV Core-core repulsion = 11950.997762 eV Total energy + Delta-G solvation = -2390.489956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15574 -37.59963 -36.09107 -34.50889 -32.34221 -30.51456 -29.03233 -25.63314 -23.40119 -22.95068 -22.08931 -20.74549 -18.97419 -18.03528 -16.82771 -16.25651 -16.05897 -15.74959 -15.42569 -15.11060 -14.67099 -14.42383 -14.07664 -13.63548 -13.35825 -13.06335 -12.95398 -12.54622 -12.33864 -12.21661 -11.91303 -11.85882 -11.55079 -11.46796 -11.37984 -11.00526 -10.81923 -10.62941 -9.12382 -8.31280 -6.35737 1.34243 1.35262 1.46483 2.32934 3.02728 3.14330 3.66426 3.74132 3.82706 4.11887 4.16563 4.31020 4.40549 4.53089 4.58383 4.65950 4.68171 4.80436 4.83922 4.85251 5.06294 5.09103 5.17977 5.23882 5.27323 5.36755 5.51223 5.53791 5.59017 5.94938 6.54997 6.65214 6.76390 6.93457 7.29507 8.85437 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.059348 B = 0.005610 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.677988 B = 4989.830647 C = 5301.660502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.039 0.961 9 C 0.174 3.826 10 N -0.684 5.684 11 C 0.062 3.938 12 C -0.070 4.070 13 H 0.073 0.927 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.143 4.143 17 C 0.108 3.892 18 H 0.062 0.938 19 O -0.587 6.587 20 C -0.104 4.104 21 H 0.268 0.732 22 H 0.022 0.978 23 H -0.015 1.015 24 H 0.336 0.664 25 H 0.061 0.939 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.394 0.606 34 H 0.062 0.938 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.819 -11.787 -0.383 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.045 3.955 10 N -0.314 5.314 11 C -0.068 4.068 12 C -0.089 4.089 13 H 0.091 0.909 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.181 4.181 17 C 0.050 3.950 18 H 0.080 0.920 19 O -0.395 6.395 20 C -0.142 4.142 21 H 0.077 0.923 22 H 0.040 0.960 23 H 0.003 0.997 24 H 0.154 0.846 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.081 0.919 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.543 -11.099 -1.059 20.786 hybrid contribution -0.074 0.591 0.818 1.012 sum 17.469 -10.508 -0.241 20.387 Atomic orbital electron populations 1.70050 1.08121 1.28245 1.52321 1.25868 0.95636 1.03255 0.94130 0.85662 0.79218 0.78473 0.79236 1.19073 1.20465 1.17709 1.21341 0.91333 0.93504 1.50436 0.94284 1.19751 0.93760 0.87452 0.94556 1.60362 1.07139 1.14267 1.49634 1.22035 0.88022 0.96991 0.99740 1.20975 0.94275 0.94498 0.99105 0.90910 1.21473 1.01063 0.95657 0.96354 1.21482 0.95072 0.96029 1.02557 1.22210 0.96372 1.01496 0.98025 1.21755 0.80565 0.95876 0.96820 0.91973 1.86471 1.20992 1.35134 1.96907 1.21453 0.94347 0.96103 1.02343 0.92311 0.96036 0.99746 0.84631 0.92020 0.95939 0.92275 0.92878 0.91078 0.91426 0.91973 0.89878 0.75628 0.91943 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.01 0.51 5.47 84.65 0.46 0.98 16 3 Si 0.95 44.74 27.46 68.60 1.88 46.62 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.25 -11.22 6.55 99.48 0.65 -10.57 16 7 C -0.53 -31.11 9.87 25.60 0.25 -30.86 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 9 C 0.17 8.49 4.51 85.56 0.39 8.87 16 10 N -0.68 -28.12 5.94 -517.91 -3.08 -31.20 16 11 C 0.06 2.02 5.07 86.31 0.44 2.45 16 12 C -0.07 -1.81 2.33 -10.80 -0.03 -1.83 16 13 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 14 C -0.11 -2.77 5.09 30.59 0.16 -2.61 16 15 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 16 C -0.14 -2.41 5.54 30.59 0.17 -2.24 16 17 C 0.11 2.05 3.47 30.61 0.11 2.16 16 18 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 19 O -0.59 -11.02 13.32 -148.98 -1.98 -13.00 16 20 C -0.10 -2.42 4.86 30.61 0.15 -2.27 16 21 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 22 H 0.02 1.06 7.56 -2.39 -0.02 1.04 16 23 H -0.02 -0.73 7.21 -2.38 -0.02 -0.75 16 24 H 0.34 13.50 8.72 -89.69 -0.78 12.72 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 1.80 7.75 -2.39 -0.02 1.79 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.39 3.69 9.08 -74.06 -0.67 3.02 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.42 279.84 -1.06 -68.48 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.45 Total: 15.92 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 2.28 Total: -27.37 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -2.78 Total: -90.64 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -1.98 Total: -13.00 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -67.42 -1.06 -68.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227751443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.338 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds