Wall clock time and date at job start Sun Mar 29 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99886 * 2 1 4 4 H 1.48504 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47344 * 299.99600 * 3 2 1 6 6 H 1.48500 * 109.47021 * 60.00222 * 3 2 1 7 7 C 1.37877 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00150 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.46903 * 111.00177 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47578 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46862 * 305.00661 * 12 11 10 14 14 C 1.53006 * 109.47223 * 64.99807 * 12 11 10 15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12 17 17 C 1.52996 * 109.46891 * 60.00410 * 16 15 14 18 18 H 1.09004 * 109.47368 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47636 * 59.99939 * 17 16 15 20 20 C 1.52997 * 109.47482 * 185.00096 * 12 11 10 21 21 H 0.96996 * 120.00299 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46907 * 60.00221 * 9 7 2 23 23 H 1.08993 * 109.47205 * 300.00063 * 9 7 2 24 24 H 1.00895 * 111.00123 * 303.95629 * 10 9 7 25 25 H 1.09001 * 109.46871 * 59.99686 * 11 10 9 26 26 H 1.09004 * 109.46883 * 300.00718 * 11 10 9 27 27 H 1.09001 * 109.47002 * 60.00080 * 14 12 11 28 28 H 1.09000 * 109.47050 * 300.00346 * 14 12 11 29 29 H 1.09002 * 109.47045 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.47375 * 59.99966 * 15 14 12 31 31 H 1.08992 * 109.47056 * 300.00064 * 16 15 14 32 32 H 1.09004 * 109.47006 * 180.02562 * 16 15 14 33 33 H 0.96702 * 114.00113 * 59.99344 * 19 17 16 34 34 H 1.09002 * 109.47153 * 59.99783 * 20 12 11 35 35 H 1.09001 * 109.46832 * 299.99974 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 1 3.2119 -5.9178 -0.8406 14 6 3.3236 -6.0135 1.3085 15 6 4.3488 -7.1491 1.3089 16 6 3.6240 -8.4906 1.1823 17 6 2.8308 -8.5202 -0.1256 18 1 2.3147 -9.4760 -0.2161 19 8 3.7243 -8.3556 -1.2286 20 6 1.8050 -7.3843 -0.1258 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8405 -3.5487 -0.7808 25 1 0.8807 -4.9813 -0.8903 26 1 0.8801 -4.9817 0.8896 27 1 2.6419 -6.1386 2.1499 28 1 3.8402 -5.0579 1.3985 29 1 4.9137 -7.1283 2.2409 30 1 5.0304 -7.0236 0.4676 31 1 2.9425 -8.6161 2.0236 32 1 4.3545 -9.2997 1.1831 33 1 4.4029 -9.0417 -1.2908 34 1 1.2398 -7.4054 -1.0576 35 1 1.1234 -7.5095 0.7155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227751453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:47 Heat of formation + Delta-G solvation = -80.855347 kcal Electronic energy + Delta-G solvation = -14437.676738 eV Core-core repulsion = 12048.138999 eV Total energy + Delta-G solvation = -2389.537739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20726 -36.00559 -34.31630 -32.48672 -30.80193 -29.61120 -26.76071 -24.07247 -22.36773 -21.42208 -20.68485 -19.56750 -16.83230 -16.35496 -15.58486 -14.80024 -14.53488 -14.41857 -14.18773 -13.45194 -12.98650 -12.68238 -12.36742 -12.18212 -11.79694 -11.52385 -11.35530 -11.17891 -10.77599 -10.75821 -10.64086 -10.51398 -10.12504 -9.99685 -9.67019 -9.55857 -9.07429 -8.43906 -7.18222 -5.99050 -4.00601 3.33838 3.40731 3.46344 4.24212 4.46688 4.75637 4.78393 4.91896 5.23332 5.30613 5.36918 5.53055 5.55091 5.62262 5.66787 5.82702 5.90744 6.05622 6.11039 6.17828 6.23265 6.38467 6.44860 6.55766 6.80328 6.86951 7.32969 7.49563 7.62471 7.84496 8.19001 8.48280 8.69804 9.09593 9.64257 11.12284 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060596 B = 0.005463 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.968109 B = 5123.772012 C = 5283.961573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.688 5.688 11 C 0.062 3.938 12 C -0.078 4.078 13 H 0.073 0.927 14 C -0.105 4.105 15 C -0.116 4.116 16 C -0.151 4.151 17 C 0.107 3.893 18 H 0.048 0.952 19 O -0.561 6.561 20 C -0.108 4.108 21 H 0.260 0.740 22 H -0.015 1.015 23 H 0.026 0.974 24 H 0.327 0.673 25 H 0.015 0.985 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.371 0.629 34 H 0.065 0.935 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -17.312 0.948 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.068 4.068 12 C -0.096 4.096 13 H 0.092 0.908 14 C -0.142 4.142 15 C -0.154 4.154 16 C -0.189 4.189 17 C 0.048 3.952 18 H 0.066 0.934 19 O -0.366 6.366 20 C -0.146 4.146 21 H 0.070 0.930 22 H 0.002 0.998 23 H 0.045 0.955 24 H 0.143 0.857 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.083 0.917 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.626 -16.639 1.543 17.632 hybrid contribution 0.257 0.354 -0.735 0.855 sum 5.884 -16.285 0.808 17.334 Atomic orbital electron populations 1.69974 1.06103 1.26601 1.51226 1.24999 0.94868 0.99376 0.95439 0.86432 0.80081 0.83378 0.77456 1.19651 1.21123 1.21030 1.21251 0.93554 0.90295 1.49903 0.91924 1.19548 0.90677 0.87541 0.95630 1.60646 1.21091 1.01282 1.48779 1.21940 0.95107 0.90387 0.99351 1.21050 0.97144 0.92778 0.98669 0.90825 1.21464 0.97329 0.98656 0.96785 1.21481 0.98375 0.94194 1.01300 1.22248 0.99784 0.98418 0.98428 1.21788 0.90359 0.97627 0.85448 0.93401 1.86582 1.46305 1.54237 1.49431 1.21594 0.96574 0.94261 1.02149 0.93026 0.99770 0.95549 0.85655 0.96670 0.92122 0.92782 0.90258 0.92629 0.91662 0.91285 0.92433 0.78331 0.91655 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.19 5.25 5.44 -4.98 -0.03 5.22 16 10 N -0.69 -15.36 5.95 -115.06 -0.68 -16.04 16 11 C 0.06 1.16 5.07 -3.83 -0.02 1.15 16 12 C -0.08 -1.19 2.18 -90.62 -0.20 -1.39 16 13 H 0.07 1.22 7.68 -51.93 -0.40 0.83 16 14 C -0.10 -1.53 5.09 -26.73 -0.14 -1.66 16 15 C -0.12 -1.38 5.78 -26.73 -0.15 -1.53 16 16 C -0.15 -1.50 5.64 -26.73 -0.15 -1.65 16 17 C 0.11 1.15 3.77 -26.71 -0.10 1.05 16 18 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 19 O -0.56 -6.39 11.97 -35.23 -0.42 -6.81 16 20 C -0.11 -1.38 4.95 -26.71 -0.13 -1.52 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.33 7.10 8.72 -39.29 -0.34 6.75 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.32 7.75 -51.93 -0.40 0.92 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.37 2.61 9.08 45.56 0.41 3.03 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -31.46 281.37 -7.81 -39.28 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.32 Total: 3.09 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.34 Total: -14.08 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.05 Total: -42.82 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.42 Total: -6.81 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.46 -7.81 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227751453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.580 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds