Wall clock time and date at job start Sun Mar 29 2020 22:21:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86797 * 119.99886 * 2 1
4 4 H 1.48504 * 109.47016 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.47344 * 299.99600 * 3 2 1
6 6 H 1.48500 * 109.47021 * 60.00222 * 3 2 1
7 7 C 1.37877 * 119.99937 * 179.97438 * 2 1 3
8 8 H 1.08007 * 120.00089 * 180.02562 * 7 2 1
9 9 C 1.50698 * 120.00150 * 0.02562 * 7 2 1
10 10 N 1.46903 * 109.47148 * 179.97438 * 9 7 2
11 11 C 1.46903 * 111.00177 * 180.02562 * 10 9 7
12 12 C 1.52992 * 109.47578 * 180.02562 * 11 10 9
13 13 H 1.08998 * 109.46862 * 305.00661 * 12 11 10
14 14 C 1.53006 * 109.47223 * 64.99807 * 12 11 10
15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 11
16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12
17 17 C 1.52996 * 109.46891 * 60.00410 * 16 15 14
18 18 H 1.09004 * 109.47368 * 179.97438 * 17 16 15
19 19 O 1.42900 * 109.47636 * 59.99939 * 17 16 15
20 20 C 1.52997 * 109.47482 * 185.00096 * 12 11 10
21 21 H 0.96996 * 120.00299 * 359.97438 * 1 2 3
22 22 H 1.09001 * 109.46907 * 60.00221 * 9 7 2
23 23 H 1.08993 * 109.47205 * 300.00063 * 9 7 2
24 24 H 1.00895 * 111.00123 * 303.95629 * 10 9 7
25 25 H 1.09001 * 109.46871 * 59.99686 * 11 10 9
26 26 H 1.09004 * 109.46883 * 300.00718 * 11 10 9
27 27 H 1.09001 * 109.47002 * 60.00080 * 14 12 11
28 28 H 1.09000 * 109.47050 * 300.00346 * 14 12 11
29 29 H 1.09002 * 109.47045 * 180.02562 * 15 14 12
30 30 H 1.09001 * 109.47375 * 59.99966 * 15 14 12
31 31 H 1.08992 * 109.47056 * 300.00064 * 16 15 14
32 32 H 1.09004 * 109.47006 * 180.02562 * 16 15 14
33 33 H 0.96702 * 114.00113 * 59.99344 * 19 17 16
34 34 H 1.09002 * 109.47153 * 59.99783 * 20 12 11
35 35 H 1.09001 * 109.46832 * 299.99974 * 20 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8903 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 7 2.2056 -3.6157 0.0005
11 6 1.5054 -4.9071 -0.0001
12 6 2.5302 -6.0431 0.0006
13 1 3.2119 -5.9178 -0.8406
14 6 3.3236 -6.0135 1.3085
15 6 4.3488 -7.1491 1.3089
16 6 3.6240 -8.4906 1.1823
17 6 2.8308 -8.5202 -0.1256
18 1 2.3147 -9.4760 -0.2161
19 8 3.7243 -8.3556 -1.2286
20 6 1.8050 -7.3843 -0.1258
21 1 -0.4850 0.8400 0.0004
22 1 0.6247 -2.5571 -0.8897
23 1 0.6240 -2.5567 0.8902
24 1 2.8405 -3.5487 -0.7808
25 1 0.8807 -4.9813 -0.8903
26 1 0.8801 -4.9817 0.8896
27 1 2.6419 -6.1386 2.1499
28 1 3.8402 -5.0579 1.3985
29 1 4.9137 -7.1283 2.2409
30 1 5.0304 -7.0236 0.4676
31 1 2.9425 -8.6161 2.0236
32 1 4.3545 -9.2997 1.1831
33 1 4.4029 -9.0417 -1.2908
34 1 1.2398 -7.4054 -1.0576
35 1 1.1234 -7.5095 0.7155
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000227751453.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:21:47
Heat of formation + Delta-G solvation = -104.180620 kcal
Electronic energy + Delta-G solvation = -14438.688198 eV
Core-core repulsion = 12048.138999 eV
Total energy + Delta-G solvation = -2390.549198 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 213.147 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.22384 -37.44200 -35.77021 -34.42716 -32.14889 -30.67627 -28.67287 -25.70394
-23.63709 -23.13826 -21.98335 -20.62298 -18.58330 -17.65202 -16.89130 -16.47320
-16.04995 -15.83835 -15.26908 -15.00569 -14.53438 -14.24058 -13.77002 -13.36982
-13.20237 -12.99688 -12.93435 -12.66625 -12.46500 -12.35667 -12.01973 -11.84291
-11.59759 -11.39232 -11.27096 -10.78510 -10.68167 -10.47817 -9.11024 -8.24062
-6.35749 1.40406 1.41403 1.55710 2.39455 3.09042 3.47548 3.52607
3.79510 3.94805 4.03501 4.23748 4.42652 4.45555 4.57287 4.63771
4.71867 4.74355 4.86636 4.92893 5.07038 5.09293 5.14344 5.24215
5.31913 5.33891 5.42461 5.57918 5.61867 5.65665 6.00631 6.43865
6.70761 6.87201 7.02970 7.35506 8.88136
Molecular weight = 213.15amu
Principal moments of inertia in cm(-1)
A = 0.060596 B = 0.005463 C = 0.005298
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 461.968109 B = 5123.772012 C = 5283.961573
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C 0.000 4.000
3 Si 0.977 3.023
4 H -0.263 1.263
5 H -0.276 1.276
6 H -0.277 1.277
7 C -0.536 4.536
8 H 0.064 0.936
9 C 0.207 3.793
10 N -0.683 5.683
11 C 0.062 3.938
12 C -0.066 4.066
13 H 0.060 0.940
14 C -0.104 4.104
15 C -0.111 4.111
16 C -0.145 4.145
17 C 0.109 3.891
18 H 0.072 0.928
19 O -0.582 6.582
20 C -0.110 4.110
21 H 0.266 0.734
22 H -0.043 1.043
23 H -0.001 1.001
24 H 0.332 0.668
25 H 0.009 0.991
26 H 0.056 0.944
27 H 0.054 0.946
28 H 0.051 0.949
29 H 0.066 0.934
30 H 0.059 0.941
31 H 0.076 0.924
32 H 0.083 0.917
33 H 0.390 0.610
34 H 0.058 0.942
35 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.391 -18.292 1.247 19.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.198 4.198
3 Si 0.801 3.199
4 H -0.186 1.186
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.574 4.574
8 H 0.082 0.918
9 C 0.079 3.921
10 N -0.313 5.313
11 C -0.067 4.067
12 C -0.085 4.085
13 H 0.079 0.921
14 C -0.141 4.141
15 C -0.149 4.149
16 C -0.183 4.183
17 C 0.050 3.950
18 H 0.090 0.910
19 O -0.390 6.390
20 C -0.147 4.147
21 H 0.074 0.926
22 H -0.025 1.025
23 H 0.017 0.983
24 H 0.148 0.852
25 H 0.027 0.973
26 H 0.074 0.926
27 H 0.072 0.928
28 H 0.070 0.930
29 H 0.084 0.916
30 H 0.077 0.923
31 H 0.094 0.906
32 H 0.102 0.898
33 H 0.239 0.761
34 H 0.077 0.923
35 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 6.947 -17.656 1.838 19.063
hybrid contribution -0.178 0.622 -0.839 1.060
sum 6.768 -17.035 0.999 18.357
Atomic orbital electron populations
1.70101 1.07901 1.28019 1.51583 1.26000 0.95823 1.03544 0.94469
0.85227 0.78864 0.78003 0.77836 1.18646 1.20179 1.20212 1.21578
0.93803 0.91411 1.50596 0.91758 1.19215 0.90703 0.89190 0.92964
1.60548 1.20275 1.01570 1.48942 1.22051 0.95991 0.89913 0.98762
1.20918 0.96072 0.92832 0.98673 0.92145 1.21419 0.97802 0.98735
0.96166 1.21426 0.97597 0.94231 1.01632 1.22224 1.00220 0.97735
0.98118 1.21774 0.90060 0.97353 0.85780 0.91013 1.86537 1.47151
1.55643 1.49692 1.21615 0.97319 0.93505 1.02305 0.92556 1.02546
0.98292 0.85175 0.97292 0.92566 0.92756 0.93023 0.91570 0.92255
0.90565 0.89821 0.76099 0.92328 0.89789
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16
2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16
3 Si 0.98 45.35 29.54 68.60 2.03 47.38 16
4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16
5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16
6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16
7 C -0.54 -31.81 9.32 25.60 0.24 -31.57 16
8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16
9 C 0.21 11.74 5.44 85.56 0.47 12.21 16
10 N -0.68 -31.51 5.95 -517.94 -3.08 -34.59 16
11 C 0.06 2.40 5.07 86.30 0.44 2.84 16
12 C -0.07 -2.01 2.18 -10.79 -0.02 -2.04 16
13 H 0.06 2.01 7.68 -2.39 -0.02 1.99 16
14 C -0.10 -2.97 5.09 30.60 0.16 -2.81 16
15 C -0.11 -2.42 5.78 30.59 0.18 -2.25 16
16 C -0.15 -2.40 5.64 30.59 0.17 -2.23 16
17 C 0.11 2.04 3.77 30.61 0.12 2.15 16
18 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
19 O -0.58 -11.89 11.97 -148.98 -1.78 -13.68 16
20 C -0.11 -2.66 4.95 30.61 0.15 -2.51 16
21 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16
22 H -0.04 -2.63 8.14 -2.39 -0.02 -2.65 16
23 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16
24 H 0.33 14.78 8.72 -89.70 -0.78 14.00 16
25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
26 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16
27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
28 H 0.05 1.75 7.75 -2.39 -0.02 1.73 16
29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
30 H 0.06 1.37 7.68 -2.39 -0.02 1.35 16
31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16
33 H 0.39 4.36 9.08 -74.06 -0.67 3.69 16
34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
Total: -1.00 -68.19 281.37 -0.60 -68.78
By element:
Atomic # 1 Polarization: 16.09 SS G_CDS: -0.40 Total: 15.70 kcal
Atomic # 6 Polarization: -28.12 SS G_CDS: 2.35 Total: -25.77 kcal
Atomic # 7 Polarization: -89.62 SS G_CDS: -2.79 Total: -92.41 kcal
Atomic # 8 Polarization: -11.89 SS G_CDS: -1.78 Total: -13.68 kcal
Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal
Total: -68.19 -0.60 -68.78 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000227751453.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.399 kcal
(2) G-P(sol) polarization free energy of solvation -68.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds