Wall clock time and date at job start Sun Mar 29 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99886 * 2 1 4 4 H 1.48504 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47344 * 299.99600 * 3 2 1 6 6 H 1.48500 * 109.47021 * 60.00222 * 3 2 1 7 7 C 1.37877 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00150 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.46903 * 111.00177 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47578 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46862 * 305.00661 * 12 11 10 14 14 C 1.53006 * 109.47223 * 64.99807 * 12 11 10 15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12 17 17 C 1.52996 * 109.46891 * 60.00410 * 16 15 14 18 18 H 1.09004 * 109.47368 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47636 * 59.99939 * 17 16 15 20 20 C 1.52997 * 109.47482 * 185.00096 * 12 11 10 21 21 H 0.96996 * 120.00299 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46907 * 60.00221 * 9 7 2 23 23 H 1.08993 * 109.47205 * 300.00063 * 9 7 2 24 24 H 1.00895 * 111.00123 * 303.95629 * 10 9 7 25 25 H 1.09001 * 109.46871 * 59.99686 * 11 10 9 26 26 H 1.09004 * 109.46883 * 300.00718 * 11 10 9 27 27 H 1.09001 * 109.47002 * 60.00080 * 14 12 11 28 28 H 1.09000 * 109.47050 * 300.00346 * 14 12 11 29 29 H 1.09002 * 109.47045 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.47375 * 59.99966 * 15 14 12 31 31 H 1.08992 * 109.47056 * 300.00064 * 16 15 14 32 32 H 1.09004 * 109.47006 * 180.02562 * 16 15 14 33 33 H 0.96702 * 114.00113 * 59.99344 * 19 17 16 34 34 H 1.09002 * 109.47153 * 59.99783 * 20 12 11 35 35 H 1.09001 * 109.46832 * 299.99974 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 1 3.2119 -5.9178 -0.8406 14 6 3.3236 -6.0135 1.3085 15 6 4.3488 -7.1491 1.3089 16 6 3.6240 -8.4906 1.1823 17 6 2.8308 -8.5202 -0.1256 18 1 2.3147 -9.4760 -0.2161 19 8 3.7243 -8.3556 -1.2286 20 6 1.8050 -7.3843 -0.1258 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8405 -3.5487 -0.7808 25 1 0.8807 -4.9813 -0.8903 26 1 0.8801 -4.9817 0.8896 27 1 2.6419 -6.1386 2.1499 28 1 3.8402 -5.0579 1.3985 29 1 4.9137 -7.1283 2.2409 30 1 5.0304 -7.0236 0.4676 31 1 2.9425 -8.6161 2.0236 32 1 4.3545 -9.2997 1.1831 33 1 4.4029 -9.0417 -1.2908 34 1 1.2398 -7.4054 -1.0576 35 1 1.1234 -7.5095 0.7155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227751453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:47 Heat of formation + Delta-G solvation = -104.180620 kcal Electronic energy + Delta-G solvation = -14438.688198 eV Core-core repulsion = 12048.138999 eV Total energy + Delta-G solvation = -2390.549198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22384 -37.44200 -35.77021 -34.42716 -32.14889 -30.67627 -28.67287 -25.70394 -23.63709 -23.13826 -21.98335 -20.62298 -18.58330 -17.65202 -16.89130 -16.47320 -16.04995 -15.83835 -15.26908 -15.00569 -14.53438 -14.24058 -13.77002 -13.36982 -13.20237 -12.99688 -12.93435 -12.66625 -12.46500 -12.35667 -12.01973 -11.84291 -11.59759 -11.39232 -11.27096 -10.78510 -10.68167 -10.47817 -9.11024 -8.24062 -6.35749 1.40406 1.41403 1.55710 2.39455 3.09042 3.47548 3.52607 3.79510 3.94805 4.03501 4.23748 4.42652 4.45555 4.57287 4.63771 4.71867 4.74355 4.86636 4.92893 5.07038 5.09293 5.14344 5.24215 5.31913 5.33891 5.42461 5.57918 5.61867 5.65665 6.00631 6.43865 6.70761 6.87201 7.02970 7.35506 8.88136 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060596 B = 0.005463 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.968109 B = 5123.772012 C = 5283.961573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.683 5.683 11 C 0.062 3.938 12 C -0.066 4.066 13 H 0.060 0.940 14 C -0.104 4.104 15 C -0.111 4.111 16 C -0.145 4.145 17 C 0.109 3.891 18 H 0.072 0.928 19 O -0.582 6.582 20 C -0.110 4.110 21 H 0.266 0.734 22 H -0.043 1.043 23 H -0.001 1.001 24 H 0.332 0.668 25 H 0.009 0.991 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.390 0.610 34 H 0.058 0.942 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 -18.292 1.247 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.313 5.313 11 C -0.067 4.067 12 C -0.085 4.085 13 H 0.079 0.921 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.183 4.183 17 C 0.050 3.950 18 H 0.090 0.910 19 O -0.390 6.390 20 C -0.147 4.147 21 H 0.074 0.926 22 H -0.025 1.025 23 H 0.017 0.983 24 H 0.148 0.852 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.239 0.761 34 H 0.077 0.923 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.947 -17.656 1.838 19.063 hybrid contribution -0.178 0.622 -0.839 1.060 sum 6.768 -17.035 0.999 18.357 Atomic orbital electron populations 1.70101 1.07901 1.28019 1.51583 1.26000 0.95823 1.03544 0.94469 0.85227 0.78864 0.78003 0.77836 1.18646 1.20179 1.20212 1.21578 0.93803 0.91411 1.50596 0.91758 1.19215 0.90703 0.89190 0.92964 1.60548 1.20275 1.01570 1.48942 1.22051 0.95991 0.89913 0.98762 1.20918 0.96072 0.92832 0.98673 0.92145 1.21419 0.97802 0.98735 0.96166 1.21426 0.97597 0.94231 1.01632 1.22224 1.00220 0.97735 0.98118 1.21774 0.90060 0.97353 0.85780 0.91013 1.86537 1.47151 1.55643 1.49692 1.21615 0.97319 0.93505 1.02305 0.92556 1.02546 0.98292 0.85175 0.97292 0.92566 0.92756 0.93023 0.91570 0.92255 0.90565 0.89821 0.76099 0.92328 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.98 45.35 29.54 68.60 2.03 47.38 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.81 9.32 25.60 0.24 -31.57 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.74 5.44 85.56 0.47 12.21 16 10 N -0.68 -31.51 5.95 -517.94 -3.08 -34.59 16 11 C 0.06 2.40 5.07 86.30 0.44 2.84 16 12 C -0.07 -2.01 2.18 -10.79 -0.02 -2.04 16 13 H 0.06 2.01 7.68 -2.39 -0.02 1.99 16 14 C -0.10 -2.97 5.09 30.60 0.16 -2.81 16 15 C -0.11 -2.42 5.78 30.59 0.18 -2.25 16 16 C -0.15 -2.40 5.64 30.59 0.17 -2.23 16 17 C 0.11 2.04 3.77 30.61 0.12 2.15 16 18 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 19 O -0.58 -11.89 11.97 -148.98 -1.78 -13.68 16 20 C -0.11 -2.66 4.95 30.61 0.15 -2.51 16 21 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.04 -2.63 8.14 -2.39 -0.02 -2.65 16 23 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 24 H 0.33 14.78 8.72 -89.70 -0.78 14.00 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.75 7.75 -2.39 -0.02 1.73 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.37 7.68 -2.39 -0.02 1.35 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.39 4.36 9.08 -74.06 -0.67 3.69 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -68.19 281.37 -0.60 -68.78 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.40 Total: 15.70 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 2.35 Total: -25.77 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -2.79 Total: -92.41 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.78 Total: -13.68 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.19 -0.60 -68.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227751453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.399 kcal (2) G-P(sol) polarization free energy of solvation -68.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds