Wall clock time and date at job start Sun Mar 29 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00013 * 2 1 4 4 H 1.08995 * 109.49599 * 29.93890 * 3 2 1 5 5 C 1.53045 * 109.49466 * 150.00065 * 3 2 1 6 6 C 1.53040 * 109.53812 * 181.31690 * 5 3 2 7 7 C 1.53201 * 109.33796 * 298.62119 * 6 5 3 8 8 N 1.46993 * 108.73781 * 54.61826 * 7 6 5 9 9 C 1.34775 * 120.60950 * 126.39288 * 8 7 6 10 10 O 1.21697 * 119.99709 * 174.66420 * 9 8 7 11 11 C 1.46372 * 120.00357 * 354.65672 * 9 8 7 12 12 H 1.08000 * 119.99809 * 6.06596 * 11 9 8 13 13 C 1.40047 * 120.00239 * 186.05969 * 11 9 8 14 14 N 1.30680 * 119.99747 * 5.53999 * 13 11 9 15 15 Si 1.86802 * 120.00400 * 185.53801 * 13 11 9 16 16 H 1.48502 * 109.46660 * 84.99686 * 15 13 11 17 17 H 1.48495 * 109.47342 * 204.99832 * 15 13 11 18 18 H 1.48496 * 109.46653 * 325.00213 * 15 13 11 19 19 C 1.46924 * 118.75803 * 306.40821 * 8 7 6 20 20 H 1.09000 * 109.47008 * 299.99926 * 1 2 3 21 21 H 1.08995 * 109.46532 * 59.99854 * 1 2 3 22 22 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46451 * 61.29955 * 5 3 2 24 24 H 1.09001 * 109.44862 * 301.32699 * 5 3 2 25 25 H 1.09001 * 109.49610 * 58.58099 * 6 5 3 26 26 H 1.09000 * 109.50274 * 178.64773 * 6 5 3 27 27 H 1.09005 * 109.58457 * 174.43830 * 7 6 5 28 28 H 1.08998 * 109.58453 * 294.86000 * 7 6 5 29 29 H 0.96999 * 119.99529 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.58780 * 293.82431 * 19 8 7 31 31 H 1.09002 * 109.70637 * 173.46608 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3448 1.9999 0.5128 5 6 3.3594 1.2638 0.7213 6 6 3.9676 2.6679 0.7507 7 6 4.2021 3.1493 -0.6847 8 7 2.9370 3.0543 -1.4272 9 6 2.4424 4.1246 -2.0799 10 8 1.4468 4.0096 -2.7704 11 6 3.1024 5.4254 -1.9583 12 1 4.0388 5.5082 -1.4268 13 6 2.5196 6.5627 -2.5314 14 7 1.3361 6.4843 -3.0800 15 14 3.4338 8.1916 -2.5114 16 1 4.3578 8.2547 -3.6722 17 1 2.4580 9.3079 -2.5940 18 1 4.2123 8.3067 -1.2521 19 6 2.2220 1.7709 -1.4441 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0324 0.5876 0.1942 24 1 3.2145 0.9095 1.7419 25 1 3.2839 3.3500 1.2560 26 1 4.9170 2.6421 1.2855 27 1 4.5423 4.1848 -0.6718 28 1 4.9541 2.5213 -1.1624 29 1 0.9323 7.2721 -3.4765 30 1 2.8126 1.0306 -1.9838 31 1 1.2559 1.8948 -1.9334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228897478.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:42 Heat of formation + Delta-G solvation = -87.030675 kcal Electronic energy + Delta-G solvation = -14742.571805 eV Core-core repulsion = 12216.933190 eV Total energy + Delta-G solvation = -2525.638615 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97620 -37.10494 -35.20528 -32.60075 -31.36212 -29.91339 -26.77436 -25.92160 -24.19663 -22.20011 -20.56410 -18.91494 -16.83317 -15.86677 -15.77333 -15.15059 -14.90570 -14.36734 -14.03904 -13.45602 -13.22074 -12.84163 -12.39934 -12.17288 -11.57058 -11.54222 -11.26094 -11.01827 -10.90918 -10.70551 -10.53909 -10.26121 -10.09422 -9.87039 -9.32890 -8.86778 -7.61426 -7.23048 -6.24458 -4.66974 3.12681 3.19153 3.21405 3.88593 4.10652 4.52613 4.64857 5.18462 5.24011 5.45021 5.49716 5.62175 5.66509 5.69944 5.77223 5.85486 6.02371 6.13622 6.20008 6.35436 6.41843 6.52813 6.59522 6.73371 7.39200 7.43520 7.64584 8.11636 8.32687 8.99340 9.40710 10.54406 10.72601 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044263 B = 0.008833 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.426096 B = 3169.019866 C = 3611.430454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.075 3.925 4 H 0.061 0.939 5 C -0.110 4.110 6 C -0.133 4.133 7 C 0.118 3.882 8 N -0.640 5.640 9 C 0.560 3.440 10 O -0.580 6.580 11 C -0.545 4.545 12 H 0.074 0.926 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.104 3.896 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.269 0.731 30 H 0.048 0.952 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 -6.554 7.348 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.016 3.984 4 H 0.079 0.921 5 C -0.147 4.147 6 C -0.171 4.171 7 C -0.006 4.006 8 N -0.379 5.379 9 C 0.366 3.634 10 O -0.463 6.463 11 C -0.582 4.582 12 H 0.092 0.908 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.021 4.021 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.699 -6.687 6.857 9.951 hybrid contribution 0.242 0.947 0.087 0.981 sum 2.941 -5.740 6.944 9.477 Atomic orbital electron populations 1.22750 0.81423 1.02031 1.00299 1.87822 1.19455 1.28379 1.95178 1.22607 0.94794 0.83640 0.97331 0.92127 1.21530 0.95526 0.97785 0.99903 1.21955 1.00650 0.95808 0.98717 1.21500 0.86890 1.02444 0.89765 1.48163 1.23592 1.10211 1.55957 1.18276 0.83822 0.82861 0.78425 1.90585 1.28505 1.84397 1.42780 1.20964 1.08738 0.90984 1.37473 0.90771 1.25734 0.94199 1.00124 0.93120 1.70000 1.13088 1.29695 1.26948 0.86394 0.79801 0.81207 0.79417 1.19572 1.20510 1.18916 1.21508 0.98971 0.86909 0.94696 0.94356 0.93680 0.90097 0.91504 0.92083 0.91549 0.91284 0.88618 0.93873 0.92013 0.93351 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.82 101.05 1.09 1.53 16 2 O -0.39 -6.51 10.35 -35.23 -0.36 -6.87 16 3 C 0.07 1.32 2.76 -26.61 -0.07 1.25 16 4 H 0.06 1.12 7.79 -51.93 -0.40 0.72 16 5 C -0.11 -1.67 5.54 -26.69 -0.15 -1.82 16 6 C -0.13 -2.04 6.08 -26.61 -0.16 -2.21 16 7 C 0.12 2.21 6.35 -3.67 -0.02 2.19 16 8 N -0.64 -14.90 2.97 -174.37 -0.52 -15.42 16 9 C 0.56 16.09 7.60 -12.99 -0.10 16.00 16 10 O -0.58 -18.95 14.53 5.19 0.08 -18.87 16 11 C -0.55 -15.21 8.87 -35.63 -0.32 -15.53 16 12 H 0.07 1.87 5.65 -52.49 -0.30 1.57 16 13 C 0.09 2.44 5.49 -17.36 -0.10 2.34 16 14 N -0.77 -22.95 11.89 55.55 0.66 -22.29 16 15 Si 0.91 19.90 29.56 -169.99 -5.03 14.87 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 19 C 0.10 2.18 6.03 -3.71 -0.02 2.16 16 20 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 21 H 0.04 0.66 8.03 -51.93 -0.42 0.24 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 1.85 5.30 -51.93 -0.28 1.58 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.92 6.93 -51.93 -0.36 1.56 16 LS Contribution 257.24 15.07 3.88 3.88 Total: -1.00 -33.48 257.24 -5.41 -38.89 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.27 Total: -0.10 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 0.15 Total: 5.92 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.14 Total: -37.71 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.29 Total: -25.75 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.48 -5.41 -38.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228897478.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.139 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds