Wall clock time and date at job start Sun Mar 29 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00013 * 2 1 4 4 H 1.08995 * 109.49599 * 29.93890 * 3 2 1 5 5 C 1.53045 * 109.49466 * 150.00065 * 3 2 1 6 6 C 1.53040 * 109.53812 * 181.31690 * 5 3 2 7 7 C 1.53201 * 109.33796 * 298.62119 * 6 5 3 8 8 N 1.46993 * 108.73781 * 54.61826 * 7 6 5 9 9 C 1.34775 * 120.60950 * 126.39288 * 8 7 6 10 10 O 1.21697 * 119.99709 * 174.66420 * 9 8 7 11 11 C 1.46372 * 120.00357 * 354.65672 * 9 8 7 12 12 H 1.08000 * 119.99809 * 6.06596 * 11 9 8 13 13 C 1.40047 * 120.00239 * 186.05969 * 11 9 8 14 14 N 1.30680 * 119.99747 * 5.53999 * 13 11 9 15 15 Si 1.86802 * 120.00400 * 185.53801 * 13 11 9 16 16 H 1.48502 * 109.46660 * 84.99686 * 15 13 11 17 17 H 1.48495 * 109.47342 * 204.99832 * 15 13 11 18 18 H 1.48496 * 109.46653 * 325.00213 * 15 13 11 19 19 C 1.46924 * 118.75803 * 306.40821 * 8 7 6 20 20 H 1.09000 * 109.47008 * 299.99926 * 1 2 3 21 21 H 1.08995 * 109.46532 * 59.99854 * 1 2 3 22 22 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46451 * 61.29955 * 5 3 2 24 24 H 1.09001 * 109.44862 * 301.32699 * 5 3 2 25 25 H 1.09001 * 109.49610 * 58.58099 * 6 5 3 26 26 H 1.09000 * 109.50274 * 178.64773 * 6 5 3 27 27 H 1.09005 * 109.58457 * 174.43830 * 7 6 5 28 28 H 1.08998 * 109.58453 * 294.86000 * 7 6 5 29 29 H 0.96999 * 119.99529 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.58780 * 293.82431 * 19 8 7 31 31 H 1.09002 * 109.70637 * 173.46608 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3448 1.9999 0.5128 5 6 3.3594 1.2638 0.7213 6 6 3.9676 2.6679 0.7507 7 6 4.2021 3.1493 -0.6847 8 7 2.9370 3.0543 -1.4272 9 6 2.4424 4.1246 -2.0799 10 8 1.4468 4.0096 -2.7704 11 6 3.1024 5.4254 -1.9583 12 1 4.0388 5.5082 -1.4268 13 6 2.5196 6.5627 -2.5314 14 7 1.3361 6.4843 -3.0800 15 14 3.4338 8.1916 -2.5114 16 1 4.3578 8.2547 -3.6722 17 1 2.4580 9.3079 -2.5940 18 1 4.2123 8.3067 -1.2521 19 6 2.2220 1.7709 -1.4441 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0324 0.5876 0.1942 24 1 3.2145 0.9095 1.7419 25 1 3.2839 3.3500 1.2560 26 1 4.9170 2.6421 1.2855 27 1 4.5423 4.1848 -0.6718 28 1 4.9541 2.5213 -1.1624 29 1 0.9323 7.2721 -3.4765 30 1 2.8126 1.0306 -1.9838 31 1 1.2559 1.8948 -1.9334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228897478.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:42 Heat of formation + Delta-G solvation = -111.424144 kcal Electronic energy + Delta-G solvation = -14743.629585 eV Core-core repulsion = 12216.933190 eV Total energy + Delta-G solvation = -2526.696396 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58647 -38.81375 -36.92934 -34.70810 -33.04145 -31.44785 -28.60675 -27.34610 -25.87826 -23.66700 -22.22993 -20.65276 -18.60083 -17.85491 -17.29052 -16.63550 -16.41971 -15.99828 -15.72460 -15.02889 -14.79841 -14.44204 -13.92034 -13.69813 -13.47313 -13.12239 -12.97663 -12.74886 -12.47498 -12.19715 -12.00665 -11.88072 -11.56562 -11.48946 -10.93429 -10.74521 -9.82040 -9.10929 -8.32690 -6.85271 1.40187 1.42536 1.56788 2.21684 2.42229 2.55543 3.02758 3.54797 3.82022 3.92959 4.08463 4.22836 4.29584 4.44718 4.45792 4.60381 4.74302 4.79573 4.82133 4.92418 5.02036 5.06288 5.15177 5.40175 5.41073 5.73417 6.05241 6.18666 6.37981 6.86215 7.39291 8.43243 8.64870 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044263 B = 0.008833 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.426096 B = 3169.019866 C = 3611.430454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.084 3.916 4 H 0.047 0.953 5 C -0.104 4.104 6 C -0.123 4.123 7 C 0.110 3.890 8 N -0.643 5.643 9 C 0.539 3.461 10 O -0.637 6.637 11 C -0.568 4.568 12 H 0.099 0.901 13 C 0.028 3.972 14 N -0.825 5.825 15 Si 0.998 3.002 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.244 1.244 19 C 0.103 3.897 20 H 0.049 0.951 21 H 0.026 0.974 22 H 0.112 0.888 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.274 0.726 30 H 0.057 0.943 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -6.523 9.222 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.025 3.975 4 H 0.065 0.935 5 C -0.141 4.141 6 C -0.161 4.161 7 C -0.013 4.013 8 N -0.381 5.381 9 C 0.346 3.654 10 O -0.525 6.525 11 C -0.604 4.604 12 H 0.117 0.883 13 C -0.187 4.187 14 N -0.454 5.454 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.167 1.167 19 C -0.022 4.022 20 H 0.068 0.932 21 H 0.045 0.955 22 H 0.130 0.870 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.920 -6.707 8.779 12.093 hybrid contribution -0.472 0.822 -0.512 1.077 sum 4.448 -5.885 8.267 11.080 Atomic orbital electron populations 1.22959 0.80088 1.04026 1.00001 1.87813 1.20947 1.27464 1.95019 1.22448 0.96454 0.83872 0.94720 0.93520 1.21537 0.93653 0.97897 1.01037 1.21902 1.02522 0.95416 0.96269 1.21791 0.85044 1.02762 0.91691 1.48059 1.24987 1.09660 1.55356 1.18758 0.83477 0.84705 0.78459 1.90531 1.30921 1.85706 1.45346 1.21508 1.09718 0.91169 1.38000 0.88323 1.27049 0.94883 1.04975 0.91824 1.70183 1.15516 1.31470 1.28263 0.85029 0.78202 0.74680 0.80400 1.18701 1.19973 1.16662 1.21584 0.97017 0.86246 0.97306 0.93205 0.95480 0.86972 0.90446 0.89479 0.92754 0.87078 0.89430 0.91802 0.91574 0.92515 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.82 113.37 1.23 1.91 16 2 O -0.39 -12.62 10.35 -148.98 -1.54 -14.16 16 3 C 0.08 2.90 2.76 30.67 0.08 2.98 16 4 H 0.05 1.73 7.79 -2.39 -0.02 1.71 16 5 C -0.10 -2.82 5.54 30.62 0.17 -2.65 16 6 C -0.12 -3.39 6.08 30.67 0.19 -3.20 16 7 C 0.11 3.91 6.35 86.35 0.55 4.46 16 8 N -0.64 -30.36 2.97 -823.79 -2.45 -32.81 16 9 C 0.54 32.13 7.60 86.36 0.66 32.79 16 10 O -0.64 -44.08 14.53 -4.34 -0.06 -44.14 16 11 C -0.57 -32.05 8.87 24.83 0.22 -31.83 16 12 H 0.10 4.89 5.65 -2.91 -0.02 4.87 16 13 C 0.03 1.54 5.49 85.30 0.47 2.01 16 14 N -0.82 -50.94 11.89 21.84 0.26 -50.68 16 15 Si 1.00 40.53 29.56 68.60 2.03 42.56 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 18 H -0.24 -8.98 7.11 99.48 0.71 -8.27 16 19 C 0.10 4.42 6.03 86.36 0.52 4.94 16 20 H 0.05 1.22 8.09 -2.39 -0.02 1.20 16 21 H 0.03 0.81 8.03 -2.39 -0.02 0.79 16 22 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.09 3.25 5.30 -2.38 -0.01 3.24 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.27 15.34 8.29 -92.71 -0.77 14.58 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.04 2.20 6.93 -2.39 -0.02 2.19 16 Total: -1.00 -76.30 257.24 3.43 -72.87 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.11 Total: 14.96 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 4.08 Total: 11.41 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.19 Total: -83.49 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -1.61 Total: -58.31 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -76.30 3.43 -72.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228897478.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.556 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds