Wall clock time and date at job start Sun Mar 29 2020 21:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.48249 * 2 1 4 4 C 1.53092 * 109.49290 * 239.96830 * 2 1 3 5 5 C 1.53172 * 109.16495 * 182.39934 * 4 2 1 6 6 H 1.08997 * 109.61765 * 176.89073 * 5 4 2 7 7 N 1.46507 * 109.54649 * 297.11505 * 5 4 2 8 8 C 1.34774 * 119.99686 * 204.55422 * 7 5 4 9 9 O 1.21683 * 120.00444 * 0.02562 * 8 7 5 10 10 C 1.46382 * 119.99501 * 180.02562 * 8 7 5 11 11 H 1.08002 * 119.99760 * 359.97438 * 10 8 7 12 12 C 1.40047 * 119.99800 * 180.27774 * 10 8 7 13 13 N 1.30674 * 120.00002 * 359.72267 * 12 10 8 14 14 Si 1.86801 * 119.99850 * 179.72342 * 12 10 8 15 15 H 1.48496 * 109.47031 * 59.99913 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47038 * 299.99890 * 14 12 10 18 18 C 1.53181 * 109.03848 * 56.98100 * 5 4 2 19 19 C 1.53093 * 109.16236 * 303.02157 * 18 5 4 20 20 O 1.42902 * 109.41597 * 57.60452 * 19 18 5 21 21 H 1.09003 * 109.47423 * 299.97458 * 1 2 3 22 22 H 1.08994 * 109.47457 * 59.98203 * 1 2 3 23 23 H 1.09002 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.51997 * 62.49382 * 4 2 1 25 25 H 1.09001 * 109.52280 * 302.31025 * 4 2 1 26 26 H 0.97000 * 119.99595 * 24.55803 * 7 5 4 27 27 H 0.96995 * 119.99831 * 179.97438 * 13 12 10 28 28 H 1.09010 * 109.51538 * 62.92302 * 18 5 4 29 29 H 1.08999 * 109.52536 * 183.04665 * 18 5 4 30 30 H 1.09000 * 109.47699 * 177.58937 * 19 18 5 31 31 H 1.09001 * 109.47696 * 297.62188 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7223 -1.2494 5 6 3.5713 -0.7705 -1.2119 6 1 3.9409 -1.3315 -2.0703 7 7 4.1058 0.5930 -1.2505 8 6 5.3511 0.8157 -1.7152 9 8 6.0313 -0.1157 -2.1033 10 6 5.8853 2.1780 -1.7532 11 1 5.2813 3.0046 -1.4092 12 6 7.1772 2.4102 -2.2416 13 7 7.9077 1.4100 -2.6583 14 14 7.8560 4.1496 -2.2973 15 1 7.8848 4.7138 -0.9240 16 1 9.2337 4.1257 -2.8511 17 1 6.9895 4.9917 -3.1605 18 6 4.0179 -1.4595 0.0813 19 6 3.4307 -0.7088 1.2793 20 8 2.0066 -0.6740 1.1665 21 1 -0.3634 0.5134 0.8902 22 1 -0.3634 0.5141 -0.8898 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7150 -0.1844 -2.1398 25 1 1.6447 -1.7375 -1.2708 26 1 3.5634 1.3354 -0.9414 27 1 8.8023 1.5709 -2.9969 28 1 3.6617 -2.4898 0.0867 29 1 5.1062 -1.4500 0.1420 30 1 3.7100 -1.2197 2.2008 31 1 3.8191 0.3095 1.2960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229013961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:34 Heat of formation + Delta-G solvation = -125.072945 kcal Electronic energy + Delta-G solvation = -14720.176667 eV Core-core repulsion = 12192.888415 eV Total energy + Delta-G solvation = -2527.288252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92413 -38.86523 -35.68347 -34.53510 -33.67700 -32.07223 -28.82453 -28.01134 -25.07171 -23.26427 -22.49337 -20.16293 -19.32408 -17.51888 -17.21525 -16.89047 -16.58835 -15.95117 -15.67565 -15.06577 -14.48935 -14.23934 -13.75388 -13.52960 -13.22432 -13.09457 -12.79870 -12.78764 -12.72850 -12.61156 -12.06826 -12.05733 -11.79395 -11.23927 -10.93148 -10.39426 -9.86220 -9.47098 -8.29722 -6.86792 1.38965 1.42274 1.53940 2.23585 2.46899 2.82997 3.09067 3.58101 3.80977 3.88451 3.99676 4.07812 4.24317 4.35480 4.59724 4.68080 4.80137 4.81723 4.90385 5.01835 5.08982 5.17633 5.20181 5.30540 5.34996 5.86604 6.21587 6.28099 6.28478 6.85947 7.53504 8.49329 8.67109 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047283 B = 0.007937 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.035977 B = 3526.814141 C = 3715.276623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.053 0.947 4 C -0.142 4.142 5 C 0.145 3.855 6 H 0.045 0.955 7 N -0.747 5.747 8 C 0.541 3.459 9 O -0.630 6.630 10 C -0.576 4.576 11 H 0.085 0.915 12 C 0.029 3.971 13 N -0.822 5.822 14 Si 0.996 3.004 15 H -0.255 1.255 16 H -0.274 1.274 17 H -0.254 1.254 18 C -0.158 4.158 19 C 0.074 3.926 20 O -0.387 6.387 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.390 0.610 27 H 0.274 0.726 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.107 0.893 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 0.565 5.447 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.023 3.977 3 H 0.071 0.929 4 C -0.180 4.180 5 C 0.039 3.961 6 H 0.063 0.937 7 N -0.402 5.402 8 C 0.345 3.655 9 O -0.517 6.517 10 C -0.613 4.613 11 H 0.104 0.896 12 C -0.186 4.186 13 N -0.452 5.452 14 Si 0.815 3.185 15 H -0.179 1.179 16 H -0.199 1.199 17 H -0.178 1.178 18 C -0.198 4.198 19 C -0.003 4.003 20 O -0.307 6.307 21 H 0.086 0.914 22 H 0.106 0.894 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.224 0.776 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.125 0.875 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.709 -0.281 5.225 12.825 hybrid contribution 0.799 0.777 -0.315 1.158 sum -10.910 0.497 4.909 11.974 Atomic orbital electron populations 1.21749 0.90720 1.03440 1.03428 1.22229 0.96562 0.94644 0.84267 0.92884 1.22414 0.92735 1.03278 0.99573 1.20670 0.94014 0.84845 0.96558 0.93701 1.45913 1.16661 1.07467 1.70131 1.18549 0.80075 0.90234 0.76638 1.90549 1.60101 1.46810 1.54272 1.21414 1.01308 0.92634 1.45899 0.89639 1.26954 0.96540 1.03378 0.91692 1.70181 1.09174 1.34884 1.30931 0.85096 0.77457 0.75963 0.79937 1.17879 1.19915 1.17809 1.22460 1.00154 1.00541 0.96614 1.22416 0.80519 0.99433 0.97929 1.87855 1.20924 1.78257 1.43633 0.91390 0.89436 0.91404 0.89811 0.88969 0.77578 0.91594 0.89785 0.93915 0.87451 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.57 71.98 0.69 -1.90 16 2 C 0.08 2.10 3.09 30.62 0.09 2.19 16 3 H 0.05 1.44 6.72 -2.39 -0.02 1.42 16 4 C -0.14 -4.03 5.07 30.68 0.16 -3.87 16 5 C 0.14 5.66 2.81 45.11 0.13 5.79 16 6 H 0.04 2.05 7.59 -2.39 -0.02 2.03 16 7 N -0.75 -33.48 4.40 -446.25 -1.96 -35.44 16 8 C 0.54 31.40 7.71 86.36 0.67 32.06 16 9 O -0.63 -42.36 14.69 -4.29 -0.06 -42.42 16 10 C -0.58 -32.74 9.54 24.83 0.24 -32.50 16 11 H 0.09 4.35 7.85 -2.91 -0.02 4.32 16 12 C 0.03 1.65 5.50 85.30 0.47 2.12 16 13 N -0.82 -50.69 11.83 21.84 0.26 -50.43 16 14 Si 1.00 41.02 29.56 68.60 2.03 43.04 16 15 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 18 C -0.16 -5.77 5.80 30.69 0.18 -5.59 16 19 C 0.07 2.32 6.68 72.01 0.48 2.80 16 20 O -0.39 -11.40 10.41 -148.98 -1.55 -12.95 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.39 15.33 7.05 -92.71 -0.65 14.68 16 27 H 0.27 15.34 8.29 -92.71 -0.77 14.58 16 28 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 Total: -1.00 -73.83 258.35 2.28 -71.55 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.47 Total: 25.55 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 3.10 Total: 1.09 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.70 Total: -85.87 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -1.61 Total: -55.37 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -73.83 2.28 -71.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229013961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.520 kcal (2) G-P(sol) polarization free energy of solvation -73.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds