Wall clock time and date at job start Sun Mar 29 2020 21:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.49073 * 2 1 4 4 C 1.53090 * 109.47804 * 120.03095 * 2 1 3 5 5 C 1.53176 * 109.16134 * 177.58964 * 4 2 1 6 6 H 1.09004 * 109.54565 * 183.15183 * 5 4 2 7 7 N 1.46496 * 109.54566 * 62.88511 * 5 4 2 8 8 C 1.34782 * 120.00158 * 155.00028 * 7 5 4 9 9 O 1.21686 * 119.99875 * 0.02562 * 8 7 5 10 10 C 1.46373 * 120.00186 * 179.97438 * 8 7 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 8 7 12 12 C 1.40042 * 120.00344 * 180.02562 * 10 8 7 13 13 N 1.30673 * 119.99770 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00312 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47165 * 59.99964 * 14 12 10 16 16 H 1.48499 * 109.47374 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47022 * 299.99938 * 14 12 10 18 18 C 1.53175 * 109.03666 * 303.01424 * 5 4 2 19 19 C 1.53092 * 109.16179 * 56.98460 * 18 5 4 20 20 O 1.42900 * 109.47724 * 239.96665 * 2 1 3 21 21 H 1.09006 * 109.46530 * 299.97418 * 1 2 3 22 22 H 1.09000 * 109.46915 * 59.96994 * 1 2 3 23 23 H 1.08999 * 109.47429 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.52724 * 57.68484 * 4 2 1 25 25 H 1.08998 * 109.57540 * 297.52645 * 4 2 1 26 26 H 0.97000 * 120.00087 * 334.99694 * 7 5 4 27 27 H 0.97004 * 119.99964 * 179.97438 * 13 12 10 28 28 H 1.09006 * 109.52647 * 176.88761 * 18 5 4 29 29 H 1.08998 * 109.52537 * 297.07653 * 18 5 4 30 30 H 1.08998 * 109.48147 * 182.40843 * 19 18 5 31 31 H 1.09001 * 109.49189 * 62.37485 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5710 -0.7710 1.2121 6 1 3.9391 -1.3328 2.0706 7 7 4.1058 0.5923 1.2506 8 6 5.3479 0.8159 1.7239 9 8 6.0252 -0.1147 2.1187 10 6 5.8824 2.1780 1.7618 11 1 5.2814 3.0039 1.4110 12 6 7.1731 2.4103 2.2530 13 7 7.9001 1.4111 2.6780 14 14 7.8550 4.1487 2.3021 15 1 6.9874 4.9968 3.1583 16 1 9.2309 4.1252 2.8604 17 1 7.8892 4.7060 0.9261 18 6 4.0175 -1.4603 -0.0809 19 6 3.4307 -0.7095 -1.2791 20 8 2.0065 -0.6743 -1.1663 21 1 -0.3632 0.5135 0.8903 22 1 -0.3633 0.5143 -0.8897 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6442 -1.7375 1.2709 25 1 1.7148 -0.1854 2.1404 26 1 3.5661 1.3341 0.9355 27 1 8.7943 1.5719 3.0179 28 1 5.1058 -1.4501 -0.1421 29 1 3.6612 -2.4903 -0.0864 30 1 3.7099 -1.2205 -2.2004 31 1 3.8192 0.3088 -1.2960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229013992.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:43 Heat of formation + Delta-G solvation = -100.693544 kcal Electronic energy + Delta-G solvation = -14718.043046 eV Core-core repulsion = 12191.811964 eV Total energy + Delta-G solvation = -2526.231082 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.47961 -36.92243 -33.95322 -32.57632 -32.32843 -30.27901 -27.46361 -26.08601 -23.66437 -21.98176 -20.68284 -18.50364 -17.32733 -16.00241 -15.65834 -15.27918 -15.01545 -14.25519 -14.07460 -13.59144 -12.77841 -12.55685 -12.30304 -12.11854 -11.85895 -11.67620 -11.47113 -11.08802 -11.00508 -10.84502 -10.47709 -10.36490 -10.28155 -9.90596 -9.06297 -8.84803 -7.62821 -7.51954 -6.19437 -4.65552 3.14657 3.19690 3.21445 4.02444 4.09624 4.57220 4.82373 5.00461 5.13503 5.28937 5.42907 5.51245 5.62970 5.74757 5.82046 5.87214 5.87868 5.95100 6.17800 6.22809 6.43725 6.47518 6.60457 6.67879 7.41931 7.53017 7.91031 8.09741 8.31613 9.01366 9.52336 10.59214 10.77961 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047262 B = 0.007934 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.297179 B = 3528.416092 C = 3715.707295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.154 4.154 5 C 0.152 3.848 6 H 0.079 0.921 7 N -0.762 5.762 8 C 0.556 3.444 9 O -0.580 6.580 10 C -0.547 4.547 11 H 0.066 0.934 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.163 4.163 19 C 0.066 3.934 20 O -0.387 6.387 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.377 0.623 27 H 0.269 0.731 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 -0.912 -4.786 11.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.076 0.924 4 C -0.193 4.193 5 C 0.046 3.954 6 H 0.097 0.903 7 N -0.417 5.417 8 C 0.360 3.640 9 O -0.463 6.463 10 C -0.584 4.584 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.397 5.397 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.202 4.202 19 C -0.011 4.011 20 O -0.306 6.306 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.209 0.791 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.975 -1.760 -4.529 11.096 hybrid contribution 0.349 1.304 0.080 1.353 sum -9.626 -0.456 -4.449 10.614 Atomic orbital electron populations 1.21760 0.93589 1.02539 1.02092 1.22023 0.94406 0.95314 0.85443 0.92429 1.22476 0.96636 1.01716 0.98423 1.20487 0.90936 0.86831 0.97156 0.90305 1.46265 1.18590 1.05702 1.71182 1.18199 0.78691 0.90329 0.76815 1.90594 1.58246 1.45533 1.51902 1.20856 1.00366 0.92050 1.45144 0.91605 1.25694 0.96527 0.97911 0.93027 1.70009 1.08563 1.31504 1.29612 0.86450 0.78201 0.83023 0.79162 1.19306 1.20544 1.19311 1.22540 1.02370 0.99066 0.96261 1.22507 0.80122 1.00381 0.98056 1.87836 1.21750 1.78104 1.42954 0.91263 0.92163 0.92075 0.90794 0.90754 0.79111 0.92064 0.90201 0.91805 0.89661 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.56 37.16 0.36 -1.25 16 2 C 0.09 1.23 3.09 -26.68 -0.08 1.15 16 3 H 0.06 0.84 6.71 -51.93 -0.35 0.50 16 4 C -0.15 -2.33 5.07 -26.59 -0.13 -2.47 16 5 C 0.15 2.94 2.82 -67.75 -0.19 2.75 16 6 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 7 N -0.76 -16.82 4.39 -55.04 -0.24 -17.07 16 8 C 0.56 15.63 7.72 -12.99 -0.10 15.53 16 9 O -0.58 -18.58 14.68 5.20 0.08 -18.50 16 10 C -0.55 -15.40 9.54 -35.63 -0.34 -15.74 16 11 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 12 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 13 N -0.77 -23.03 11.83 55.55 0.66 -22.38 16 14 Si 0.91 20.14 29.56 -169.99 -5.02 15.11 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 C -0.16 -2.94 5.80 -26.59 -0.15 -3.10 16 19 C 0.07 1.07 6.68 37.21 0.25 1.32 16 20 O -0.39 -6.16 10.41 -35.23 -0.37 -6.53 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.38 7.48 7.05 -40.82 -0.29 7.19 16 27 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 28 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 LS Contribution 258.34 15.07 3.89 3.89 Total: -1.00 -33.05 258.34 -5.86 -38.91 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.36 Total: 6.00 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.49 Total: 0.56 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.42 Total: -39.44 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.29 Total: -25.03 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.05 -5.86 -38.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229013992.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.782 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds