Wall clock time and date at job start Sun Mar 29 2020 21:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.49073 * 2 1 4 4 C 1.53090 * 109.47804 * 120.03095 * 2 1 3 5 5 C 1.53176 * 109.16134 * 177.58964 * 4 2 1 6 6 H 1.09004 * 109.54565 * 183.15183 * 5 4 2 7 7 N 1.46496 * 109.54566 * 62.88511 * 5 4 2 8 8 C 1.34782 * 120.00158 * 155.00028 * 7 5 4 9 9 O 1.21686 * 119.99875 * 0.02562 * 8 7 5 10 10 C 1.46373 * 120.00186 * 179.97438 * 8 7 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 8 7 12 12 C 1.40042 * 120.00344 * 180.02562 * 10 8 7 13 13 N 1.30673 * 119.99770 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00312 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47165 * 59.99964 * 14 12 10 16 16 H 1.48499 * 109.47374 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47022 * 299.99938 * 14 12 10 18 18 C 1.53175 * 109.03666 * 303.01424 * 5 4 2 19 19 C 1.53092 * 109.16179 * 56.98460 * 18 5 4 20 20 O 1.42900 * 109.47724 * 239.96665 * 2 1 3 21 21 H 1.09006 * 109.46530 * 299.97418 * 1 2 3 22 22 H 1.09000 * 109.46915 * 59.96994 * 1 2 3 23 23 H 1.08999 * 109.47429 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.52724 * 57.68484 * 4 2 1 25 25 H 1.08998 * 109.57540 * 297.52645 * 4 2 1 26 26 H 0.97000 * 120.00087 * 334.99694 * 7 5 4 27 27 H 0.97004 * 119.99964 * 179.97438 * 13 12 10 28 28 H 1.09006 * 109.52647 * 176.88761 * 18 5 4 29 29 H 1.08998 * 109.52537 * 297.07653 * 18 5 4 30 30 H 1.08998 * 109.48147 * 182.40843 * 19 18 5 31 31 H 1.09001 * 109.49189 * 62.37485 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5710 -0.7710 1.2121 6 1 3.9391 -1.3328 2.0706 7 7 4.1058 0.5923 1.2506 8 6 5.3479 0.8159 1.7239 9 8 6.0252 -0.1147 2.1187 10 6 5.8824 2.1780 1.7618 11 1 5.2814 3.0039 1.4110 12 6 7.1731 2.4103 2.2530 13 7 7.9001 1.4111 2.6780 14 14 7.8550 4.1487 2.3021 15 1 6.9874 4.9968 3.1583 16 1 9.2309 4.1252 2.8604 17 1 7.8892 4.7060 0.9261 18 6 4.0175 -1.4603 -0.0809 19 6 3.4307 -0.7095 -1.2791 20 8 2.0065 -0.6743 -1.1663 21 1 -0.3632 0.5135 0.8903 22 1 -0.3633 0.5143 -0.8897 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6442 -1.7375 1.2709 25 1 1.7148 -0.1854 2.1404 26 1 3.5661 1.3341 0.9355 27 1 8.7943 1.5719 3.0179 28 1 5.1058 -1.4501 -0.1421 29 1 3.6612 -2.4903 -0.0864 30 1 3.7099 -1.2205 -2.2004 31 1 3.8192 0.3088 -1.2960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229013992.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:43 Heat of formation + Delta-G solvation = -125.087433 kcal Electronic energy + Delta-G solvation = -14719.100845 eV Core-core repulsion = 12191.811964 eV Total energy + Delta-G solvation = -2527.288880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.92412 -38.86550 -35.68393 -34.53553 -33.67689 -32.07238 -28.82488 -28.01175 -25.07129 -23.26368 -22.49630 -20.16207 -19.32464 -17.51968 -17.21542 -16.88912 -16.58994 -15.95161 -15.67368 -15.06842 -14.49051 -14.23759 -13.75499 -13.52832 -13.22389 -13.09469 -12.79925 -12.78738 -12.72899 -12.61146 -12.06850 -12.05803 -11.79547 -11.23869 -10.93169 -10.39289 -9.86299 -9.47167 -8.29757 -6.86848 1.38982 1.42275 1.53948 2.23578 2.46852 2.83015 3.09080 3.58077 3.81016 3.88444 3.99655 4.07790 4.24316 4.35486 4.59681 4.68078 4.80126 4.81684 4.90363 5.01793 5.08965 5.17623 5.20190 5.30505 5.34956 5.86600 6.21565 6.28090 6.28497 6.85919 7.53436 8.49281 8.67067 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047262 B = 0.007934 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.297179 B = 3528.416092 C = 3715.707295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.053 0.947 4 C -0.142 4.142 5 C 0.145 3.855 6 H 0.045 0.955 7 N -0.747 5.747 8 C 0.541 3.459 9 O -0.630 6.630 10 C -0.576 4.576 11 H 0.086 0.914 12 C 0.029 3.971 13 N -0.822 5.822 14 Si 0.996 3.004 15 H -0.254 1.254 16 H -0.274 1.274 17 H -0.255 1.255 18 C -0.158 4.158 19 C 0.074 3.926 20 O -0.387 6.387 21 H 0.087 0.913 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.390 0.610 27 H 0.274 0.726 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 0.559 -5.524 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.023 3.977 3 H 0.071 0.929 4 C -0.180 4.180 5 C 0.039 3.961 6 H 0.063 0.937 7 N -0.402 5.402 8 C 0.345 3.655 9 O -0.517 6.517 10 C -0.612 4.612 11 H 0.104 0.896 12 C -0.186 4.186 13 N -0.452 5.452 14 Si 0.816 3.184 15 H -0.178 1.178 16 H -0.199 1.199 17 H -0.179 1.179 18 C -0.198 4.198 19 C -0.003 4.003 20 O -0.307 6.307 21 H 0.106 0.894 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.224 0.776 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.676 -0.285 -5.294 12.823 hybrid contribution 0.800 0.776 0.310 1.157 sum -10.876 0.491 -4.984 11.974 Atomic orbital electron populations 1.21752 0.90725 1.03437 1.03426 1.22225 0.96562 0.94639 0.84267 0.92879 1.22415 0.92761 1.03275 0.99566 1.20666 0.94006 0.84854 0.96572 0.93684 1.45909 1.17025 1.07510 1.69720 1.18552 0.80054 0.90226 0.76671 1.90550 1.60148 1.46860 1.54185 1.21410 1.01484 0.92680 1.45673 0.89637 1.26953 0.96552 1.03368 0.91694 1.70183 1.09296 1.34897 1.30791 0.85094 0.77455 0.75964 0.79933 1.17805 1.19916 1.17882 1.22460 1.00152 1.00545 0.96605 1.22421 0.80518 0.99440 0.97933 1.87856 1.20933 1.78242 1.43636 0.89446 0.91387 0.91403 0.88984 0.89833 0.77577 0.91594 0.93909 0.89773 0.87442 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.56 71.98 0.69 -1.90 16 2 C 0.08 2.10 3.09 30.62 0.09 2.20 16 3 H 0.05 1.44 6.71 -2.39 -0.02 1.42 16 4 C -0.14 -4.04 5.07 30.68 0.16 -3.88 16 5 C 0.14 5.66 2.82 45.11 0.13 5.78 16 6 H 0.04 2.06 7.58 -2.38 -0.02 2.04 16 7 N -0.75 -33.48 4.39 -446.26 -1.96 -35.44 16 8 C 0.54 31.40 7.72 86.36 0.67 32.06 16 9 O -0.63 -42.37 14.68 -4.30 -0.06 -42.44 16 10 C -0.58 -32.73 9.54 24.83 0.24 -32.49 16 11 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 12 C 0.03 1.65 5.50 85.30 0.47 2.12 16 13 N -0.82 -50.68 11.83 21.83 0.26 -50.43 16 14 Si 1.00 41.01 29.56 68.60 2.03 43.04 16 15 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 16 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 17 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 18 C -0.16 -5.76 5.80 30.68 0.18 -5.58 16 19 C 0.07 2.31 6.68 72.01 0.48 2.79 16 20 O -0.39 -11.39 10.41 -148.98 -1.55 -12.94 16 21 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.39 15.33 7.05 -92.71 -0.65 14.68 16 27 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 28 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 Total: -1.00 -73.82 258.34 2.28 -71.55 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.47 Total: 25.57 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 3.10 Total: 1.09 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.70 Total: -85.86 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -1.61 Total: -55.38 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -73.82 2.28 -71.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229013992.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.540 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds