Wall clock time and date at job start Sun Mar 29 2020 21:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.44835 * 2 1 4 4 C 1.53038 * 109.45723 * 240.03712 * 2 1 3 5 5 C 1.53191 * 109.31175 * 178.61638 * 4 2 1 6 6 N 1.47205 * 108.85798 * 54.64776 * 5 4 2 7 7 C 1.34778 * 120.81420 * 126.33392 * 6 5 4 8 8 O 1.21693 * 119.99621 * 174.88036 * 7 6 5 9 9 C 1.46370 * 120.00106 * 354.88131 * 7 6 5 10 10 H 1.08000 * 119.99819 * 5.74750 * 9 7 6 11 11 C 1.40044 * 120.00272 * 185.73957 * 9 7 6 12 12 N 1.30676 * 119.99928 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00455 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46807 * 59.99947 * 13 11 9 15 15 H 1.48493 * 109.47235 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46885 * 300.00493 * 13 11 9 17 17 C 1.46925 * 118.55440 * 306.48404 * 6 5 4 18 18 C 1.53041 * 109.45824 * 119.97056 * 2 1 3 19 19 H 1.09000 * 109.52342 * 301.35196 * 18 2 1 20 20 O 1.42894 * 109.49889 * 61.43218 * 18 2 1 21 21 H 1.08996 * 109.47170 * 300.03343 * 1 2 3 22 22 H 1.09003 * 109.46806 * 60.02877 * 1 2 3 23 23 H 1.09001 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.50024 * 298.56419 * 4 2 1 25 25 H 1.09002 * 109.50107 * 58.63561 * 4 2 1 26 26 H 1.08996 * 109.59225 * 174.42108 * 5 4 2 27 27 H 1.09001 * 109.58779 * 294.84683 * 5 4 2 28 28 H 0.97000 * 120.00154 * 179.97438 * 12 11 9 29 29 H 1.08994 * 109.59005 * 293.67826 * 17 6 5 30 30 H 1.08999 * 109.58717 * 173.39375 * 17 6 5 31 31 H 0.96696 * 114.00402 * 179.83771 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0707 -1.2499 0.0015 7 6 4.9643 -2.2589 0.0044 8 8 5.4377 -2.6494 1.0553 9 6 5.3654 -2.8849 -1.2564 10 1 5.0180 -2.4794 -2.1952 11 6 6.1998 -4.0096 -1.2455 12 7 6.6198 -4.5006 -0.1097 13 14 6.7122 -4.8082 -2.8547 14 1 7.4506 -3.8217 -3.6836 15 1 7.5889 -5.9729 -2.5721 16 1 5.5041 -5.2647 -3.5874 17 6 3.5714 -0.6886 1.2642 18 6 2.0398 -0.7209 1.2500 19 1 1.6572 -0.2214 2.1401 20 8 1.5914 -2.0775 1.2345 21 1 -0.3633 0.5143 0.8896 22 1 -0.3633 0.5134 -0.8903 23 1 -0.3634 -1.0277 0.0005 24 1 1.6978 -1.7556 -1.2384 25 1 1.6568 -0.2209 -2.1399 26 1 3.9417 -1.2844 -2.0985 27 1 3.9143 0.3409 -1.3674 28 1 7.1974 -5.2798 -0.1021 29 1 3.9142 0.3408 1.3674 30 1 3.9416 -1.2825 2.0998 31 1 1.8803 -2.5961 1.9978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229015190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:06 Heat of formation + Delta-G solvation = -94.051307 kcal Electronic energy + Delta-G solvation = -14978.448004 eV Core-core repulsion = 12452.504951 eV Total energy + Delta-G solvation = -2525.943053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.02897 -36.51485 -34.51628 -32.78848 -32.27038 -29.71850 -27.63395 -25.89493 -22.65793 -22.46546 -20.05549 -18.95338 -16.82573 -16.01581 -15.62329 -14.58570 -14.47981 -14.18839 -14.02297 -13.38515 -13.00885 -12.37323 -12.35050 -12.16944 -11.66320 -11.29211 -11.19607 -11.02691 -10.86060 -10.55021 -10.42051 -10.22054 -10.01677 -9.74009 -9.44734 -8.81847 -7.55200 -7.12572 -6.17012 -4.60616 3.17320 3.21990 3.23743 4.10825 4.53648 4.60440 4.75017 5.11773 5.18415 5.31617 5.55192 5.74802 5.83035 5.89886 5.95501 5.99593 6.10241 6.30017 6.32931 6.40004 6.50227 6.55979 6.61897 6.94723 7.48840 7.64967 8.11564 8.20439 8.39531 9.05319 9.48120 10.60861 10.79552 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044931 B = 0.009475 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.022948 B = 2954.328417 C = 3242.613773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.073 0.927 4 C -0.125 4.125 5 C 0.121 3.879 6 N -0.633 5.633 7 C 0.564 3.436 8 O -0.582 6.582 9 C -0.543 4.543 10 H 0.072 0.928 11 C 0.088 3.912 12 N -0.770 5.770 13 Si 0.906 3.094 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.268 1.268 17 C 0.088 3.912 18 C 0.097 3.903 19 H 0.048 0.952 20 O -0.556 6.556 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.038 0.962 28 H 0.268 0.732 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 7.175 -1.375 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.164 4.164 5 C -0.003 4.003 6 N -0.371 5.371 7 C 0.370 3.630 8 O -0.466 6.466 9 C -0.580 4.580 10 H 0.090 0.910 11 C -0.132 4.132 12 N -0.399 5.399 13 Si 0.730 3.270 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.037 4.037 18 C 0.037 3.963 19 H 0.065 0.935 20 O -0.361 6.361 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.627 6.999 -1.254 11.179 hybrid contribution 0.447 -0.429 -0.279 0.679 sum -8.180 6.570 -1.533 10.603 Atomic orbital electron populations 1.21758 0.95327 1.02200 1.00527 1.21096 0.95570 0.98294 0.95055 0.90862 1.21921 0.96962 1.01642 0.95865 1.21478 0.92207 0.97401 0.89234 1.48067 1.47002 1.38982 1.03065 1.18182 0.77130 0.77127 0.90579 1.90574 1.57440 1.64380 1.34164 1.20933 1.31668 1.13346 0.92025 0.91023 1.25721 0.94276 0.96268 0.96898 1.70006 1.25237 1.18518 1.26122 0.86464 0.79030 0.78885 0.82574 1.19273 1.20567 1.19243 1.21832 0.92703 0.98087 0.91042 1.22166 0.94038 0.83414 0.96703 0.93454 1.86446 1.77119 1.22524 1.49974 0.93463 0.93221 0.91960 0.90690 0.92347 0.88958 0.94368 0.92111 0.93603 0.89770 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.06 37.16 0.34 -1.48 16 2 C -0.08 -1.22 2.51 -90.58 -0.23 -1.44 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -2.08 5.22 -26.61 -0.14 -2.22 16 5 C 0.12 2.34 6.36 -3.56 -0.02 2.32 16 6 N -0.63 -14.72 2.93 -174.21 -0.51 -15.23 16 7 C 0.56 16.30 7.62 -12.99 -0.10 16.20 16 8 O -0.58 -18.96 14.48 5.20 0.08 -18.88 16 9 C -0.54 -15.48 8.88 -35.64 -0.32 -15.80 16 10 H 0.07 1.87 5.66 -52.49 -0.30 1.57 16 11 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 12 N -0.77 -23.28 11.84 55.55 0.66 -22.63 16 13 Si 0.91 20.33 29.56 -169.99 -5.02 15.31 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 17 C 0.09 1.74 6.05 -3.71 -0.02 1.72 16 18 C 0.10 1.59 3.23 -26.61 -0.09 1.50 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 20 O -0.56 -10.02 11.90 -35.23 -0.42 -10.44 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.89 7.72 -51.93 -0.40 0.48 16 24 H 0.07 1.43 7.61 -51.93 -0.40 1.03 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.89 5.33 -51.93 -0.28 1.61 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.83 7.03 -51.93 -0.37 1.47 16 31 H 0.37 5.97 9.08 45.56 0.41 6.38 16 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -34.31 254.18 -5.48 -39.78 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.41 Total: 5.07 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.67 Total: 3.19 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.15 Total: -37.86 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.34 Total: -29.32 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.31 -5.48 -39.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229015190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.267 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds