Wall clock time and date at job start Sun Mar 29 2020 21:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.44835 * 2 1 4 4 C 1.53038 * 109.45723 * 240.03712 * 2 1 3 5 5 C 1.53191 * 109.31175 * 178.61638 * 4 2 1 6 6 N 1.47205 * 108.85798 * 54.64776 * 5 4 2 7 7 C 1.34778 * 120.81420 * 126.33392 * 6 5 4 8 8 O 1.21693 * 119.99621 * 174.88036 * 7 6 5 9 9 C 1.46370 * 120.00106 * 354.88131 * 7 6 5 10 10 H 1.08000 * 119.99819 * 5.74750 * 9 7 6 11 11 C 1.40044 * 120.00272 * 185.73957 * 9 7 6 12 12 N 1.30676 * 119.99928 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00455 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46807 * 59.99947 * 13 11 9 15 15 H 1.48493 * 109.47235 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46885 * 300.00493 * 13 11 9 17 17 C 1.46925 * 118.55440 * 306.48404 * 6 5 4 18 18 C 1.53041 * 109.45824 * 119.97056 * 2 1 3 19 19 H 1.09000 * 109.52342 * 301.35196 * 18 2 1 20 20 O 1.42894 * 109.49889 * 61.43218 * 18 2 1 21 21 H 1.08996 * 109.47170 * 300.03343 * 1 2 3 22 22 H 1.09003 * 109.46806 * 60.02877 * 1 2 3 23 23 H 1.09001 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.50024 * 298.56419 * 4 2 1 25 25 H 1.09002 * 109.50107 * 58.63561 * 4 2 1 26 26 H 1.08996 * 109.59225 * 174.42108 * 5 4 2 27 27 H 1.09001 * 109.58779 * 294.84683 * 5 4 2 28 28 H 0.97000 * 120.00154 * 179.97438 * 12 11 9 29 29 H 1.08994 * 109.59005 * 293.67826 * 17 6 5 30 30 H 1.08999 * 109.58717 * 173.39375 * 17 6 5 31 31 H 0.96696 * 114.00402 * 179.83771 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0707 -1.2499 0.0015 7 6 4.9643 -2.2589 0.0044 8 8 5.4377 -2.6494 1.0553 9 6 5.3654 -2.8849 -1.2564 10 1 5.0180 -2.4794 -2.1952 11 6 6.1998 -4.0096 -1.2455 12 7 6.6198 -4.5006 -0.1097 13 14 6.7122 -4.8082 -2.8547 14 1 7.4506 -3.8217 -3.6836 15 1 7.5889 -5.9729 -2.5721 16 1 5.5041 -5.2647 -3.5874 17 6 3.5714 -0.6886 1.2642 18 6 2.0398 -0.7209 1.2500 19 1 1.6572 -0.2214 2.1401 20 8 1.5914 -2.0775 1.2345 21 1 -0.3633 0.5143 0.8896 22 1 -0.3633 0.5134 -0.8903 23 1 -0.3634 -1.0277 0.0005 24 1 1.6978 -1.7556 -1.2384 25 1 1.6568 -0.2209 -2.1399 26 1 3.9417 -1.2844 -2.0985 27 1 3.9143 0.3409 -1.3674 28 1 7.1974 -5.2798 -0.1021 29 1 3.9142 0.3408 1.3674 30 1 3.9416 -1.2825 2.0998 31 1 1.8803 -2.5961 1.9978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229015190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:05 Heat of formation + Delta-G solvation = -120.756244 kcal Electronic energy + Delta-G solvation = -14979.606017 eV Core-core repulsion = 12452.504951 eV Total energy + Delta-G solvation = -2527.101066 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60815 -38.41222 -36.06636 -34.73434 -34.05239 -31.24771 -29.26065 -27.76891 -24.17619 -23.94660 -21.75122 -20.48743 -18.64112 -17.79531 -17.50362 -16.20381 -16.00836 -15.90771 -15.60178 -14.71530 -14.53631 -14.16882 -13.98708 -13.61825 -13.18257 -13.08161 -12.85284 -12.62181 -12.41224 -12.27745 -12.05317 -11.73380 -11.45172 -11.19566 -10.92252 -10.88068 -9.75782 -8.98692 -8.28559 -6.82099 1.38406 1.42220 1.53319 2.23730 2.47052 2.86138 3.42816 3.62722 3.86200 3.90953 4.07244 4.21530 4.52936 4.53810 4.70796 4.78492 4.82545 4.89892 5.00125 5.02326 5.17157 5.20366 5.40716 5.43947 5.62437 5.80190 6.15108 6.42488 6.82951 6.88773 7.44930 8.48486 8.68401 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044931 B = 0.009475 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.022948 B = 2954.328417 C = 3242.613773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.097 0.903 4 C -0.117 4.117 5 C 0.114 3.886 6 N -0.637 5.637 7 C 0.545 3.455 8 O -0.635 6.635 9 C -0.571 4.571 10 H 0.091 0.909 11 C 0.028 3.972 12 N -0.824 5.824 13 Si 0.994 3.006 14 H -0.253 1.253 15 H -0.274 1.274 16 H -0.255 1.255 17 C 0.083 3.917 18 C 0.100 3.900 19 H 0.081 0.919 20 O -0.574 6.574 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.273 0.727 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 8.627 -3.176 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 H 0.116 0.884 4 C -0.155 4.155 5 C -0.008 4.008 6 N -0.373 5.373 7 C 0.351 3.649 8 O -0.523 6.523 9 C -0.608 4.608 10 H 0.108 0.892 11 C -0.186 4.186 12 N -0.454 5.454 13 Si 0.813 3.187 14 H -0.177 1.177 15 H -0.199 1.199 16 H -0.179 1.179 17 C -0.041 4.041 18 C 0.040 3.960 19 H 0.098 0.902 20 O -0.380 6.380 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.973 8.505 -3.069 13.462 hybrid contribution 0.818 -0.792 0.333 1.186 sum -9.156 7.713 -2.736 12.280 Atomic orbital electron populations 1.21683 0.93396 1.01536 1.02445 1.21193 0.97127 0.98809 0.92892 0.88437 1.21838 0.94526 1.00623 0.98558 1.21701 0.94335 0.98005 0.86801 1.47939 1.45839 1.37755 1.05763 1.18559 0.77893 0.78255 0.90216 1.90519 1.59667 1.66509 1.35634 1.21477 1.32319 1.14126 0.92837 0.89163 1.26984 0.93644 0.96589 1.01430 1.70184 1.26313 1.19415 1.29477 0.85133 0.79025 0.77844 0.76703 1.17689 1.19867 1.17882 1.22066 0.95415 0.98219 0.88423 1.22320 0.91250 0.83137 0.99302 0.90171 1.86431 1.77164 1.23737 1.50646 0.91742 0.91175 0.93895 0.93775 0.88900 0.90604 0.91760 0.91692 0.91381 0.92919 0.77324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.06 71.98 0.65 -2.27 16 2 C -0.08 -2.16 2.51 -10.77 -0.03 -2.18 16 3 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.12 -3.59 5.22 30.67 0.16 -3.43 16 5 C 0.11 4.27 6.36 86.31 0.55 4.82 16 6 N -0.64 -29.81 2.93 -823.29 -2.41 -32.22 16 7 C 0.54 32.58 7.62 86.36 0.66 33.24 16 8 O -0.64 -43.49 14.48 -4.33 -0.06 -43.56 16 9 C -0.57 -33.20 8.88 24.83 0.22 -32.98 16 10 H 0.09 4.72 5.66 -2.91 -0.02 4.70 16 11 C 0.03 1.61 5.50 85.30 0.47 2.08 16 12 N -0.82 -51.57 11.84 21.83 0.26 -51.31 16 13 Si 0.99 41.83 29.56 68.60 2.03 43.86 16 14 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 16 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 17 C 0.08 3.25 6.05 86.36 0.52 3.77 16 18 C 0.10 3.08 3.23 30.67 0.10 3.18 16 19 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 20 O -0.57 -20.59 11.90 -148.98 -1.77 -22.36 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.11 7.72 -2.39 -0.02 1.09 16 24 H 0.04 1.63 7.61 -2.39 -0.02 1.61 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.08 3.05 5.33 -2.39 -0.01 3.03 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.05 2.38 7.03 -2.39 -0.02 2.37 16 31 H 0.38 12.44 9.08 -74.06 -0.67 11.77 16 Total: -1.00 -77.78 254.18 1.80 -75.98 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.46 Total: 23.40 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 3.30 Total: 6.22 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.15 Total: -83.53 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: -1.84 Total: -65.92 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -77.78 1.80 -75.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229015190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.776 kcal (2) G-P(sol) polarization free energy of solvation -77.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds