Wall clock time and date at job start Sun Mar 29 2020 21:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.44635 * 2 1 4 4 C 1.53041 * 109.45703 * 119.96514 * 2 1 3 5 5 C 1.53193 * 109.31032 * 181.38553 * 4 2 1 6 6 N 1.46921 * 108.77752 * 305.36779 * 5 4 2 7 7 C 1.34779 * 120.62990 * 233.58849 * 6 5 4 8 8 O 1.21690 * 119.99745 * 174.76811 * 7 6 5 9 9 C 1.46373 * 120.00076 * 354.76462 * 7 6 5 10 10 H 1.07999 * 119.99740 * 5.02852 * 9 7 6 11 11 C 1.40045 * 120.00184 * 185.02322 * 9 7 6 12 12 N 1.30673 * 120.00082 * 5.05409 * 11 9 7 13 13 Si 1.86800 * 120.00114 * 185.05846 * 11 9 7 14 14 H 1.48503 * 109.47169 * 84.99893 * 13 11 9 15 15 H 1.48499 * 109.47300 * 204.99851 * 13 11 9 16 16 H 1.48500 * 109.46853 * 325.00088 * 13 11 9 17 17 C 1.46925 * 118.74063 * 53.60431 * 6 5 4 18 18 C 1.53037 * 109.46078 * 240.03098 * 2 1 3 19 19 H 1.08996 * 109.52280 * 298.58357 * 18 2 1 20 20 O 1.42908 * 109.49621 * 58.66102 * 18 2 1 21 21 H 1.09003 * 109.47266 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46956 * 299.96526 * 1 2 3 23 23 H 1.09001 * 109.47071 * 59.96661 * 1 2 3 24 24 H 1.08990 * 109.50257 * 61.43424 * 4 2 1 25 25 H 1.09000 * 109.52598 * 301.35176 * 4 2 1 26 26 H 1.09001 * 109.59048 * 185.57259 * 5 4 2 27 27 H 1.09006 * 109.70402 * 65.21818 * 5 4 2 28 28 H 0.96993 * 120.00228 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.58766 * 186.60949 * 17 6 5 30 30 H 1.08999 * 109.58946 * 66.18350 * 17 6 5 31 31 H 0.96690 * 114.00031 * 179.83831 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6886 1.2643 6 7 4.0679 -1.2488 0.0001 7 6 4.9621 -2.2572 0.0001 8 8 5.2938 -2.7763 -1.0494 9 6 5.5343 -2.7279 1.2624 10 1 5.1808 -2.3238 2.1995 11 6 6.5401 -3.7024 1.2551 12 7 7.0372 -4.1198 0.1210 13 14 7.1710 -4.4057 2.8666 14 1 6.2908 -5.5212 3.2982 15 1 8.5545 -4.9113 2.6781 16 1 7.1692 -3.3437 3.9045 17 6 3.5714 -0.6886 -1.2642 18 6 2.0399 -0.7208 -1.2500 19 1 1.6978 -1.7556 -1.2388 20 8 1.5382 -0.0653 -2.4166 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5133 0.8903 23 1 -0.3633 0.5144 -0.8897 24 1 1.6978 -1.7555 1.2384 25 1 1.6572 -0.2212 2.1402 26 1 3.9417 -1.2844 2.0985 27 1 3.9164 0.3402 1.3685 28 1 7.7340 -4.7945 0.1159 29 1 3.9417 -1.2845 -2.0983 30 1 3.9143 0.3409 -1.3674 31 1 1.8241 -0.4682 -3.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229015200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:08 Heat of formation + Delta-G solvation = -123.497092 kcal Electronic energy + Delta-G solvation = -14779.187138 eV Core-core repulsion = 12251.967220 eV Total energy + Delta-G solvation = -2527.219918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63273 -38.52870 -36.47885 -34.76489 -34.10828 -31.11238 -29.33263 -27.75337 -24.26652 -23.90526 -21.81927 -20.59935 -18.70250 -17.94720 -17.72181 -16.45822 -16.16073 -15.73952 -15.67721 -14.73963 -14.44285 -14.20961 -13.81749 -13.61928 -13.42772 -13.07390 -12.95364 -12.74395 -12.42276 -12.40803 -12.01417 -11.85512 -11.40003 -11.23543 -11.12895 -10.92372 -9.82355 -9.11329 -8.32582 -6.85670 1.40015 1.41879 1.56360 2.22604 2.43234 2.72328 3.32534 3.54051 3.81535 3.89369 3.99814 4.21548 4.33607 4.50418 4.60611 4.78640 4.85239 4.87910 4.92637 4.99762 5.14344 5.15499 5.38872 5.42150 5.47615 5.73951 6.11616 6.34045 6.76334 6.86070 7.38543 8.43102 8.64685 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048891 B = 0.008700 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.560112 B = 3217.773635 C = 3645.262458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.119 4.119 5 C 0.112 3.888 6 N -0.642 5.642 7 C 0.540 3.460 8 O -0.636 6.636 9 C -0.569 4.569 10 H 0.097 0.903 11 C 0.028 3.972 12 N -0.824 5.824 13 Si 0.997 3.003 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.245 1.245 17 C 0.090 3.910 18 C 0.109 3.891 19 H 0.038 0.962 20 O -0.568 6.568 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.275 0.725 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 6.976 4.514 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.011 4.011 6 N -0.380 5.380 7 C 0.346 3.654 8 O -0.523 6.523 9 C -0.605 4.605 10 H 0.115 0.885 11 C -0.187 4.187 12 N -0.454 5.454 13 Si 0.816 3.184 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.168 1.168 17 C -0.034 4.034 18 C 0.048 3.952 19 H 0.056 0.944 20 O -0.374 6.374 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -9.848 7.000 4.279 12.817 hybrid contribution 0.902 -0.890 -0.395 1.327 sum -8.946 6.110 3.885 11.509 Atomic orbital electron populations 1.21678 0.93137 1.01725 1.02462 1.21095 0.97327 0.99504 0.91931 0.90386 1.21979 0.94560 1.00846 0.98348 1.21730 0.94173 0.98514 0.86683 1.48017 1.46491 1.37806 1.05711 1.18723 0.77918 0.78280 0.90451 1.90528 1.65289 1.60639 1.35875 1.21515 1.21863 1.24410 0.92684 0.88483 1.27030 0.94985 0.95115 1.01564 1.70174 1.21375 1.24010 1.29820 0.85046 0.77505 0.79185 0.76684 1.18600 1.19951 1.16817 1.21921 0.94960 0.97737 0.88773 1.22042 0.91124 0.95005 0.86981 0.94404 1.86400 1.75182 1.59277 1.16564 0.93324 0.90717 0.92439 0.92750 0.87367 0.89577 0.91990 0.91554 0.92869 0.92359 0.76066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.03 71.98 0.65 -2.38 16 2 C -0.08 -2.21 2.43 -10.77 -0.03 -2.24 16 3 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.12 -3.34 5.36 30.67 0.16 -3.17 16 5 C 0.11 3.99 6.31 86.36 0.55 4.53 16 6 N -0.64 -29.80 2.97 -824.00 -2.45 -32.25 16 7 C 0.54 31.78 7.61 86.36 0.66 32.43 16 8 O -0.64 -43.28 14.49 -4.32 -0.06 -43.34 16 9 C -0.57 -31.98 8.85 24.83 0.22 -31.76 16 10 H 0.10 4.81 5.69 -2.91 -0.02 4.80 16 11 C 0.03 1.56 5.49 85.30 0.47 2.03 16 12 N -0.82 -50.70 11.87 21.83 0.26 -50.44 16 13 Si 1.00 40.47 29.56 68.60 2.03 42.50 16 14 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 15 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 16 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 17 C 0.09 3.69 6.07 86.36 0.52 4.22 16 18 C 0.11 3.59 3.07 30.67 0.09 3.68 16 19 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 20 O -0.57 -16.35 12.60 -148.98 -1.88 -18.23 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.35 7.65 -2.39 -0.02 1.33 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.09 3.21 5.37 -2.39 -0.01 3.19 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 29 H 0.05 2.47 6.99 -2.39 -0.02 2.46 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.39 8.75 9.08 -74.06 -0.67 8.08 16 Total: -1.00 -75.68 255.26 1.66 -74.03 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.46 Total: 20.39 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 3.30 Total: 7.34 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.19 Total: -82.69 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -1.94 Total: -61.57 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -75.68 1.66 -74.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229015200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.469 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds