Wall clock time and date at job start Sun Mar 29 2020 21:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.45749 * 2 1 4 4 C 1.53042 * 109.45834 * 240.04053 * 2 1 3 5 5 C 1.53626 * 109.23830 * 178.49029 * 4 2 1 6 6 N 1.46924 * 108.54492 * 54.85192 * 5 4 2 7 7 C 1.34786 * 120.62898 * 126.36602 * 6 5 4 8 8 O 1.21686 * 119.99836 * 174.54152 * 7 6 5 9 9 C 1.46366 * 119.99810 * 354.53956 * 7 6 5 10 10 H 1.07997 * 120.00280 * 5.29663 * 9 7 6 11 11 C 1.40053 * 119.99986 * 185.29302 * 9 7 6 12 12 N 1.30668 * 120.00018 * 184.97305 * 11 9 7 13 13 Si 1.86803 * 119.99613 * 4.97463 * 11 9 7 14 14 H 1.48504 * 109.47020 * 180.02562 * 13 11 9 15 15 H 1.48490 * 109.47172 * 299.99879 * 13 11 9 16 16 H 1.48498 * 109.47211 * 60.00043 * 13 11 9 17 17 C 1.46926 * 118.74068 * 306.09742 * 6 5 4 18 18 C 1.53034 * 109.46046 * 119.97038 * 2 1 3 19 19 H 1.09007 * 109.50012 * 61.43599 * 18 2 1 20 20 O 1.42904 * 109.52318 * 301.35669 * 18 2 1 21 21 H 1.08994 * 109.47455 * 300.02937 * 1 2 3 22 22 H 1.08998 * 109.46887 * 60.03465 * 1 2 3 23 23 H 1.09004 * 109.46738 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.49587 * 298.56202 * 4 2 1 25 25 H 1.08990 * 109.49860 * 58.62888 * 4 2 1 26 26 H 1.08999 * 109.74084 * 295.11612 * 5 4 2 27 27 H 1.08995 * 109.66694 * 174.54814 * 5 4 2 28 28 H 0.96995 * 120.00419 * 354.99529 * 12 11 9 29 29 H 1.08999 * 109.59034 * 173.64622 * 17 6 5 30 30 H 1.08995 * 109.58837 * 294.06750 * 17 6 5 31 31 H 0.96702 * 114.00028 * 180.14358 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2502 5 6 3.5756 -0.6847 -1.2643 6 7 4.0679 -1.2487 -0.0001 7 6 4.9622 -2.2571 -0.0002 8 8 5.4372 -2.6491 1.0493 9 6 5.3619 -2.8807 -1.2626 10 1 5.0070 -2.4782 -2.1999 11 6 6.2046 -3.9993 -1.2552 12 7 6.6398 -4.4969 -2.3823 13 14 6.7063 -4.7798 0.3661 14 1 7.5954 -5.9398 0.1028 15 1 7.4288 -3.7809 1.1938 16 1 5.4941 -5.2391 1.0905 17 6 3.5714 -0.6886 1.2642 18 6 2.0399 -0.7208 1.2500 19 1 1.6979 -1.7558 1.2381 20 8 1.5382 -0.0660 2.4169 21 1 -0.3634 0.5142 0.8897 22 1 -0.3633 0.5133 -0.8903 23 1 -0.3633 -1.0277 0.0005 24 1 1.6978 -1.7555 -1.2385 25 1 1.6568 -0.2209 -2.1398 26 1 3.9189 0.3451 -1.3631 27 1 3.9488 -1.2780 -2.0990 28 1 6.3224 -4.1380 -3.2256 29 1 3.9417 -1.2845 2.0983 30 1 3.9143 0.3409 1.3675 31 1 1.8241 -0.4695 3.2479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229015209.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:11 Heat of formation + Delta-G solvation = -111.941541 kcal Electronic energy + Delta-G solvation = -14863.385051 eV Core-core repulsion = 12336.666219 eV Total energy + Delta-G solvation = -2526.718832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31330 -37.19682 -35.24482 -33.04815 -32.85267 -29.76668 -27.91332 -25.85463 -22.80138 -22.68828 -20.31542 -19.08812 -17.59385 -16.86458 -15.74515 -15.23369 -14.66477 -14.44377 -13.86177 -13.23717 -13.12861 -12.89437 -12.62223 -12.33772 -12.22536 -11.89392 -11.61228 -11.28198 -10.77358 -10.42864 -10.36970 -10.25254 -10.02378 -9.89707 -9.09300 -9.00062 -7.94217 -7.64645 -7.02992 -4.96812 3.54509 3.64785 3.94197 4.14602 4.27421 4.44641 4.60270 4.94835 4.99781 5.21468 5.42747 5.45015 5.53028 5.67351 5.75805 5.83893 5.94610 6.10574 6.17249 6.22603 6.31623 6.34983 6.38888 6.60837 7.17621 7.65266 7.71587 7.81310 8.07258 8.79567 8.91505 9.97446 10.29667 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045029 B = 0.009697 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.676806 B = 2886.810018 C = 3296.511401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.631 5.631 7 C 0.554 3.446 8 O -0.617 6.617 9 C -0.596 4.596 10 H 0.077 0.923 11 C 0.060 3.940 12 N -0.831 5.831 13 Si 1.129 2.871 14 H -0.322 1.322 15 H -0.281 1.281 16 H -0.292 1.292 17 C 0.090 3.910 18 C 0.096 3.904 19 H 0.056 0.944 20 O -0.568 6.568 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.277 0.723 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 7.365 2.848 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.006 4.006 6 N -0.366 5.366 7 C 0.364 3.636 8 O -0.511 6.511 9 C -0.632 4.632 10 H 0.095 0.905 11 C -0.157 4.157 12 N -0.459 5.459 13 Si 0.962 3.038 14 H -0.254 1.254 15 H -0.208 1.208 16 H -0.219 1.219 17 C -0.035 4.035 18 C 0.036 3.964 19 H 0.074 0.926 20 O -0.373 6.373 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.923 6.428 3.485 11.536 hybrid contribution -0.868 1.083 -0.558 1.497 sum -9.791 7.512 2.926 12.683 Atomic orbital electron populations 1.21741 0.94986 1.01572 1.01465 1.21072 0.95900 0.99748 0.93268 0.90919 1.22091 0.96830 1.01105 0.96671 1.21631 0.92250 0.98099 0.88654 1.47691 1.46587 1.38340 1.03971 1.18504 0.77085 0.77618 0.90366 1.90130 1.59693 1.65931 1.35320 1.22139 1.33349 1.15539 0.92189 0.90463 1.27171 0.90332 0.93164 1.05066 1.70656 1.35355 1.40658 0.99188 0.82386 0.76373 0.73449 0.71566 1.25358 1.20829 1.21922 1.21915 0.92804 0.98688 0.90074 1.22241 0.93403 0.95417 0.85346 0.92593 1.86440 1.75456 1.59261 1.16125 0.92120 0.93060 0.93063 0.91357 0.91016 0.93439 0.88490 0.91185 0.89534 0.92913 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.03 37.16 0.34 -1.42 16 2 C -0.08 -1.17 2.43 -90.58 -0.22 -1.39 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -1.92 5.38 -26.38 -0.14 -2.06 16 5 C 0.12 2.13 6.38 -3.49 -0.02 2.11 16 6 N -0.63 -13.73 2.97 -174.17 -0.52 -14.25 16 7 C 0.55 14.80 7.45 -12.99 -0.10 14.71 16 8 O -0.62 -17.81 11.49 5.20 0.06 -17.75 16 9 C -0.60 -16.61 9.30 -35.63 -0.33 -16.94 16 10 H 0.08 2.08 5.85 -52.49 -0.31 1.77 16 11 C 0.06 1.73 5.52 -17.37 -0.10 1.64 16 12 N -0.83 -23.78 13.64 55.55 0.76 -23.02 16 13 Si 1.13 29.89 25.99 -169.99 -4.42 25.47 16 14 H -0.32 -8.19 7.11 56.52 0.40 -7.79 16 15 H -0.28 -7.69 6.78 56.52 0.38 -7.31 16 16 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 17 C 0.09 1.67 6.04 -3.71 -0.02 1.65 16 18 C 0.10 1.51 3.07 -26.62 -0.08 1.43 16 19 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 20 O -0.57 -7.96 12.60 -35.23 -0.44 -8.40 16 21 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 1.90 5.30 -51.93 -0.28 1.63 16 28 H 0.28 7.58 8.72 -40.82 -0.36 7.23 16 29 H 0.09 1.72 7.04 -51.93 -0.37 1.36 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.38 3.91 9.08 45.56 0.41 4.32 16 LS Contribution 251.05 15.07 3.78 3.78 Total: -1.00 -31.75 251.05 -4.94 -36.68 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.48 Total: -2.23 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.68 Total: -0.28 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.24 Total: -37.27 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.38 Total: -26.16 kcal Atomic # 14 Polarization: 29.89 SS G_CDS: -4.42 Total: 25.47 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.75 -4.94 -36.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229015209.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.258 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds