Wall clock time and date at job start Sun Mar 29 2020 21:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.45749 * 2 1 4 4 C 1.53042 * 109.45834 * 240.04053 * 2 1 3 5 5 C 1.53626 * 109.23830 * 178.49029 * 4 2 1 6 6 N 1.46924 * 108.54492 * 54.85192 * 5 4 2 7 7 C 1.34786 * 120.62898 * 126.36602 * 6 5 4 8 8 O 1.21686 * 119.99836 * 174.54152 * 7 6 5 9 9 C 1.46366 * 119.99810 * 354.53956 * 7 6 5 10 10 H 1.07997 * 120.00280 * 5.29663 * 9 7 6 11 11 C 1.40053 * 119.99986 * 185.29302 * 9 7 6 12 12 N 1.30668 * 120.00018 * 184.97305 * 11 9 7 13 13 Si 1.86803 * 119.99613 * 4.97463 * 11 9 7 14 14 H 1.48504 * 109.47020 * 180.02562 * 13 11 9 15 15 H 1.48490 * 109.47172 * 299.99879 * 13 11 9 16 16 H 1.48498 * 109.47211 * 60.00043 * 13 11 9 17 17 C 1.46926 * 118.74068 * 306.09742 * 6 5 4 18 18 C 1.53034 * 109.46046 * 119.97038 * 2 1 3 19 19 H 1.09007 * 109.50012 * 61.43599 * 18 2 1 20 20 O 1.42904 * 109.52318 * 301.35669 * 18 2 1 21 21 H 1.08994 * 109.47455 * 300.02937 * 1 2 3 22 22 H 1.08998 * 109.46887 * 60.03465 * 1 2 3 23 23 H 1.09004 * 109.46738 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.49587 * 298.56202 * 4 2 1 25 25 H 1.08990 * 109.49860 * 58.62888 * 4 2 1 26 26 H 1.08999 * 109.74084 * 295.11612 * 5 4 2 27 27 H 1.08995 * 109.66694 * 174.54814 * 5 4 2 28 28 H 0.96995 * 120.00419 * 354.99529 * 12 11 9 29 29 H 1.08999 * 109.59034 * 173.64622 * 17 6 5 30 30 H 1.08995 * 109.58837 * 294.06750 * 17 6 5 31 31 H 0.96702 * 114.00028 * 180.14358 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2502 5 6 3.5756 -0.6847 -1.2643 6 7 4.0679 -1.2487 -0.0001 7 6 4.9622 -2.2571 -0.0002 8 8 5.4372 -2.6491 1.0493 9 6 5.3619 -2.8807 -1.2626 10 1 5.0070 -2.4782 -2.1999 11 6 6.2046 -3.9993 -1.2552 12 7 6.6398 -4.4969 -2.3823 13 14 6.7063 -4.7798 0.3661 14 1 7.5954 -5.9398 0.1028 15 1 7.4288 -3.7809 1.1938 16 1 5.4941 -5.2391 1.0905 17 6 3.5714 -0.6886 1.2642 18 6 2.0399 -0.7208 1.2500 19 1 1.6979 -1.7558 1.2381 20 8 1.5382 -0.0660 2.4169 21 1 -0.3634 0.5142 0.8897 22 1 -0.3633 0.5133 -0.8903 23 1 -0.3633 -1.0277 0.0005 24 1 1.6978 -1.7555 -1.2385 25 1 1.6568 -0.2209 -2.1398 26 1 3.9189 0.3451 -1.3631 27 1 3.9488 -1.2780 -2.0990 28 1 6.3224 -4.1380 -3.2256 29 1 3.9417 -1.2845 2.0983 30 1 3.9143 0.3409 1.3675 31 1 1.8241 -0.4695 3.2479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229015209.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:11 Heat of formation + Delta-G solvation = -136.042466 kcal Electronic energy + Delta-G solvation = -14864.430145 eV Core-core repulsion = 12336.666219 eV Total energy + Delta-G solvation = -2527.763926 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88142 -38.90165 -36.63710 -35.15791 -34.37456 -31.19821 -29.42809 -27.69859 -24.26218 -24.06941 -21.88118 -20.75523 -19.42119 -18.20887 -17.62419 -16.96754 -15.98706 -15.93257 -15.78340 -14.84891 -14.79587 -14.36137 -14.30680 -13.87846 -13.76401 -13.24983 -12.94829 -12.59119 -12.50528 -12.37147 -11.98970 -11.70754 -11.35730 -11.19776 -11.17919 -11.05016 -10.05541 -9.38861 -9.21767 -7.13967 1.40328 1.52402 1.93255 2.15853 2.32318 2.58225 3.22110 3.29315 3.74352 3.81198 3.92554 4.13092 4.24603 4.42602 4.51791 4.68374 4.78468 4.83006 4.86076 4.89129 5.06453 5.09443 5.33822 5.39142 5.42801 5.56357 5.81453 6.06028 6.62876 6.76017 6.96605 7.90853 8.10770 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045029 B = 0.009697 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.676806 B = 2886.810018 C = 3296.511401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.118 4.118 5 C 0.111 3.889 6 N -0.631 5.631 7 C 0.547 3.453 8 O -0.645 6.645 9 C -0.611 4.611 10 H 0.080 0.920 11 C 0.030 3.970 12 N -0.846 5.846 13 Si 1.160 2.840 14 H -0.306 1.306 15 H -0.298 1.298 16 H -0.296 1.296 17 C 0.088 3.912 18 C 0.107 3.893 19 H 0.043 0.957 20 O -0.566 6.566 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.279 0.721 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 8.600 2.868 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.157 4.157 5 C -0.012 4.012 6 N -0.365 5.365 7 C 0.355 3.645 8 O -0.540 6.540 9 C -0.647 4.647 10 H 0.098 0.902 11 C -0.185 4.185 12 N -0.474 5.474 13 Si 0.992 3.008 14 H -0.237 1.237 15 H -0.226 1.226 16 H -0.224 1.224 17 C -0.036 4.036 18 C 0.047 3.953 19 H 0.061 0.939 20 O -0.373 6.373 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.123 0.877 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.456 7.683 3.495 13.438 hybrid contribution -0.437 0.800 -0.529 1.055 sum -10.893 8.484 2.965 14.122 Atomic orbital electron populations 1.21679 0.93140 1.01786 1.02481 1.21093 0.97373 0.99560 0.91871 0.90253 1.22026 0.94045 1.01006 0.98598 1.21849 0.94656 0.98394 0.86290 1.47656 1.45272 1.37047 1.06517 1.18476 0.77780 0.78698 0.89509 1.90101 1.60836 1.67135 1.35934 1.22329 1.33572 1.15743 0.93103 0.90199 1.27747 0.90788 0.93876 1.06105 1.70658 1.36123 1.41270 0.99365 0.81968 0.75958 0.73103 0.69821 1.23705 1.22625 1.22427 1.22098 0.95026 0.98563 0.87910 1.22024 0.91008 0.95319 0.86949 0.93855 1.86425 1.75095 1.59220 1.16519 0.92201 0.90990 0.93260 0.92635 0.87705 0.91407 0.90350 0.91030 0.91388 0.91652 0.75828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.03 71.98 0.65 -2.20 16 2 C -0.08 -2.06 2.43 -10.77 -0.03 -2.08 16 3 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.21 5.38 30.82 0.17 -3.04 16 5 C 0.11 3.82 6.38 86.51 0.55 4.37 16 6 N -0.63 -26.95 2.97 -823.17 -2.44 -29.39 16 7 C 0.55 29.28 7.45 86.36 0.64 29.93 16 8 O -0.64 -37.46 11.49 -4.30 -0.05 -37.51 16 9 C -0.61 -34.21 9.30 24.83 0.23 -33.98 16 10 H 0.08 4.33 5.85 -2.91 -0.02 4.31 16 11 C 0.03 1.71 5.52 85.31 0.47 2.18 16 12 N -0.85 -48.39 13.64 21.84 0.30 -48.10 16 13 Si 1.16 61.07 25.99 68.60 1.78 62.85 16 14 H -0.31 -15.14 7.11 99.48 0.71 -14.44 16 15 H -0.30 -16.40 6.78 99.48 0.67 -15.72 16 16 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 17 C 0.09 3.16 6.04 86.36 0.52 3.68 16 18 C 0.11 3.16 3.07 30.67 0.09 3.25 16 19 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 20 O -0.57 -14.34 12.60 -148.98 -1.88 -16.22 16 21 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 3.01 5.30 -2.39 -0.01 3.00 16 28 H 0.28 15.31 8.72 -92.71 -0.81 14.50 16 29 H 0.07 2.69 7.04 -2.39 -0.02 2.67 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.39 7.23 9.08 -74.06 -0.67 6.56 16 Total: -1.00 -66.80 251.05 1.40 -65.39 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 0.39 Total: 0.87 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 3.30 Total: 2.10 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -2.14 Total: -77.48 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -1.93 Total: -53.73 kcal Atomic # 14 Polarization: 61.07 SS G_CDS: 1.78 Total: 62.85 kcal Total: -66.80 1.40 -65.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229015209.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.649 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds