Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.45914 * 2 1 4 4 C 1.53043 * 109.45673 * 119.96821 * 2 1 3 5 5 C 1.53195 * 109.31198 * 181.38543 * 4 2 1 6 6 N 1.46928 * 108.77655 * 305.36469 * 5 4 2 7 7 C 1.34777 * 120.63508 * 233.62961 * 6 5 4 8 8 O 1.21685 * 120.00175 * 174.72996 * 7 6 5 9 9 C 1.46376 * 119.99552 * 354.72720 * 7 6 5 10 10 H 1.08001 * 120.00519 * 5.02247 * 9 7 6 11 11 C 1.40044 * 119.99844 * 185.01850 * 9 7 6 12 12 N 1.30675 * 120.00099 * 5.05786 * 11 9 7 13 13 Si 1.86803 * 120.00140 * 185.05512 * 11 9 7 14 14 H 1.48510 * 109.46719 * 85.00187 * 13 11 9 15 15 H 1.48506 * 109.47151 * 205.00153 * 13 11 9 16 16 H 1.48498 * 109.47231 * 325.00420 * 13 11 9 17 17 C 1.46927 * 118.73582 * 53.60660 * 6 5 4 18 18 C 1.53191 * 108.89630 * 306.32203 * 17 6 5 19 19 H 1.08997 * 109.49832 * 174.65704 * 18 17 6 20 20 O 1.42900 * 109.49639 * 294.75572 * 18 17 6 21 21 H 1.08999 * 109.47095 * 300.03235 * 1 2 3 22 22 H 1.08999 * 109.46725 * 60.03333 * 1 2 3 23 23 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.49898 * 61.44159 * 4 2 1 25 25 H 1.08995 * 109.50328 * 301.33509 * 4 2 1 26 26 H 1.09002 * 109.58818 * 185.58310 * 5 4 2 27 27 H 1.08996 * 109.59072 * 65.15214 * 5 4 2 28 28 H 0.97006 * 120.00183 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.58420 * 66.18075 * 17 6 5 30 30 H 1.08998 * 109.58504 * 186.46041 * 17 6 5 31 31 H 0.96701 * 113.99788 * 299.99906 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5714 -0.6887 1.2643 6 7 4.0679 -1.2489 0.0001 7 6 4.9615 -2.2579 0.0000 8 8 5.2926 -2.7773 -1.0494 9 6 5.5337 -2.7288 1.2623 10 1 5.1808 -2.3242 2.1994 11 6 6.5387 -3.7040 1.2549 12 7 7.0353 -4.1219 0.1207 13 14 7.1696 -4.4073 2.8663 14 1 6.2887 -5.5222 3.2983 15 1 8.5528 -4.9140 2.6775 16 1 7.1689 -3.3452 3.9041 17 6 3.5714 -0.6886 -1.2642 18 6 2.0399 -0.7211 -1.2537 19 1 1.6593 -0.2218 -2.1447 20 8 1.5917 -2.0779 -1.2383 21 1 -0.3633 0.5143 0.8897 22 1 -0.3633 0.5133 -0.8903 23 1 -0.3633 -1.0277 0.0005 24 1 1.6978 -1.7558 1.2382 25 1 1.6572 -0.2209 2.1399 26 1 3.9416 -1.2847 2.0984 27 1 3.9143 0.3408 1.3675 28 1 7.7317 -4.7971 0.1155 29 1 3.9144 0.3409 -1.3672 30 1 3.9438 -1.2830 -2.0985 31 1 1.8827 -2.5968 -2.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229015220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = -94.476533 kcal Electronic energy + Delta-G solvation = -14961.570868 eV Core-core repulsion = 12435.609376 eV Total energy + Delta-G solvation = -2525.961492 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03106 -36.50978 -34.52774 -32.79293 -32.27982 -29.72259 -27.64541 -25.89155 -22.65121 -22.46482 -20.05622 -18.96905 -16.82678 -16.01061 -15.62469 -14.59033 -14.52626 -14.19140 -14.00156 -13.38694 -12.98491 -12.44943 -12.30765 -12.12029 -11.74955 -11.30053 -11.16458 -11.02204 -10.89714 -10.56904 -10.39166 -10.21384 -10.01764 -9.74090 -9.46806 -8.81830 -7.54935 -7.12096 -6.19039 -4.61116 3.15783 3.22076 3.24429 4.10554 4.53755 4.60319 4.74303 5.11338 5.17947 5.31584 5.55190 5.72982 5.82632 5.89663 5.95136 5.99795 6.09911 6.29666 6.32676 6.40032 6.50829 6.56161 6.60807 6.93154 7.48189 7.65740 8.11286 8.20453 8.39377 9.04724 9.48014 10.60208 10.78930 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047594 B = 0.009268 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.169975 B = 3020.469430 C = 3332.084139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.126 4.126 5 C 0.122 3.878 6 N -0.633 5.633 7 C 0.564 3.436 8 O -0.583 6.583 9 C -0.544 4.544 10 H 0.073 0.927 11 C 0.088 3.912 12 N -0.770 5.770 13 Si 0.906 3.094 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.088 3.912 18 C 0.097 3.903 19 H 0.048 0.952 20 O -0.556 6.556 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.039 0.961 28 H 0.268 0.732 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 7.109 1.348 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.164 4.164 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.370 3.630 8 O -0.466 6.466 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.131 4.131 12 N -0.399 5.399 13 Si 0.730 3.270 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.037 4.037 18 C 0.037 3.963 19 H 0.066 0.934 20 O -0.361 6.361 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.732 6.888 1.229 11.189 hybrid contribution 0.535 -0.368 0.274 0.705 sum -8.197 6.520 1.503 10.581 Atomic orbital electron populations 1.21758 0.95343 1.02179 1.00534 1.21151 0.95548 0.98306 0.94994 0.90842 1.21937 0.97037 1.01558 0.95914 1.21424 0.92035 0.97599 0.89184 1.47996 1.47125 1.38885 1.03069 1.18189 0.76986 0.77277 0.90557 1.90563 1.63416 1.58349 1.34284 1.20972 1.21416 1.23644 0.92052 0.90953 1.25721 0.95235 0.95235 0.96926 1.70004 1.20495 1.23095 1.26269 0.86421 0.78198 0.79742 0.82597 1.19614 1.20528 1.18950 1.21842 0.92778 0.98059 0.91056 1.22228 0.94081 0.83385 0.96654 0.93430 1.86438 1.77019 1.22521 1.50150 0.93221 0.93452 0.91986 0.90811 0.92307 0.89008 0.94320 0.92119 0.93529 0.89697 0.77800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.06 37.16 0.34 -1.47 16 2 C -0.08 -1.21 2.52 -90.42 -0.23 -1.44 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.08 5.22 -26.61 -0.14 -2.22 16 5 C 0.12 2.36 6.31 -3.71 -0.02 2.34 16 6 N -0.63 -14.70 2.92 -174.43 -0.51 -15.21 16 7 C 0.56 16.29 7.61 -12.99 -0.10 16.19 16 8 O -0.58 -18.93 14.49 5.20 0.08 -18.85 16 9 C -0.54 -15.50 8.85 -35.63 -0.32 -15.82 16 10 H 0.07 1.89 5.69 -52.49 -0.30 1.59 16 11 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 12 N -0.77 -23.25 11.87 55.55 0.66 -22.59 16 13 Si 0.91 20.31 29.56 -169.99 -5.03 15.28 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 17 C 0.09 1.73 6.07 -3.71 -0.02 1.70 16 18 C 0.10 1.58 3.25 -26.45 -0.09 1.50 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 20 O -0.56 -10.01 11.92 -35.23 -0.42 -10.43 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.88 7.73 -51.93 -0.40 0.48 16 24 H 0.07 1.39 7.62 -51.93 -0.40 1.00 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.88 5.37 -51.93 -0.28 1.60 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.85 6.99 -51.93 -0.36 1.48 16 31 H 0.38 5.97 9.08 45.56 0.41 6.39 16 LS Contribution 254.24 15.07 3.83 3.83 Total: -1.00 -34.25 254.24 -5.48 -39.73 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.42 Total: 5.08 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -0.67 Total: 3.17 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.15 Total: -37.81 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.34 Total: -29.28 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.25 -5.48 -39.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229015220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.750 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds