Wall clock time and date at job start Sun Mar 29 2020 21:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.98578 * 2 1 4 4 O 1.43742 * 109.88202 * 238.91322 * 2 1 3 5 5 C 1.44379 * 106.97584 * 214.06394 * 4 2 1 6 6 C 1.54997 * 103.49127 * 40.05828 * 5 4 2 7 7 C 1.54104 * 109.87809 * 121.07768 * 2 1 3 8 8 C 1.52998 * 110.48956 * 2.65017 * 7 2 1 9 9 N 1.46498 * 110.48792 * 240.13093 * 7 2 1 10 10 C 1.34777 * 119.99828 * 179.72354 * 9 7 2 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 7 12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 7 13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00151 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46768 * 120.00068 * 16 14 12 19 19 H 1.48498 * 109.47283 * 240.00320 * 16 14 12 20 20 H 1.08996 * 109.47075 * 298.91470 * 1 2 3 21 21 H 1.09000 * 109.47229 * 58.92142 * 1 2 3 22 22 H 1.09004 * 109.46867 * 178.92164 * 1 2 3 23 23 H 1.08994 * 110.61756 * 158.56056 * 5 4 2 24 24 H 1.09004 * 110.61456 * 281.56118 * 5 4 2 25 25 H 1.09001 * 110.90546 * 204.78215 * 6 5 4 26 26 H 1.08998 * 110.90985 * 81.17780 * 6 5 4 27 27 H 1.09008 * 109.47078 * 298.15496 * 8 7 2 28 28 H 1.08999 * 109.47147 * 58.15131 * 8 7 2 29 29 H 1.08996 * 109.47302 * 178.15684 * 8 7 2 30 30 H 0.97001 * 120.00384 * 0.02562 * 9 7 2 31 31 H 0.96991 * 119.99824 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0189 -0.6980 -1.1576 5 6 3.2380 -1.3641 -0.7646 6 6 2.9196 -1.8914 0.6578 7 6 2.0540 -0.7481 1.2412 8 6 0.8898 -1.3161 2.0553 9 7 2.8711 0.1422 2.0695 10 6 3.4227 -0.3167 3.2103 11 8 3.2464 -1.4719 3.5498 12 6 4.2341 0.5744 4.0410 13 1 4.3904 1.5998 3.7400 14 6 4.8069 0.0978 5.2268 15 7 4.6175 -1.1427 5.5914 16 14 5.8430 1.2349 6.2866 17 1 5.9042 2.5786 5.6575 18 1 5.2320 1.3476 7.6354 19 1 7.2160 0.6825 6.4096 20 1 -0.3633 0.4969 0.8995 21 1 -0.3634 0.5305 -0.8801 22 1 -0.3633 -1.0275 -0.0193 23 1 3.4585 -2.1908 -1.4399 24 1 4.0685 -0.6588 -0.7354 25 1 3.8332 -2.0222 1.2376 26 1 2.3540 -2.8220 0.6101 27 1 0.2599 -0.4991 2.4075 28 1 0.3002 -1.9850 1.4283 29 1 1.2796 -1.8688 2.9100 30 1 3.0115 1.0631 1.7991 31 1 5.0145 -1.4729 6.4124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229019022.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:59 Heat of formation + Delta-G solvation = -110.578573 kcal Electronic energy + Delta-G solvation = -14956.405371 eV Core-core repulsion = 12429.745642 eV Total energy + Delta-G solvation = -2526.659729 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28983 -38.80828 -35.57688 -34.46118 -32.84107 -31.95365 -28.60422 -28.08613 -25.78782 -23.49337 -21.95940 -20.16104 -19.19207 -17.71233 -17.32511 -16.75728 -16.31599 -15.80618 -15.33067 -14.94097 -14.57277 -14.41064 -13.64274 -13.50422 -13.22805 -13.06420 -12.80708 -12.62785 -12.50680 -12.30132 -12.10580 -11.95859 -11.84963 -11.56904 -10.92162 -10.66239 -9.65639 -9.42812 -8.25874 -6.82406 1.39156 1.39992 1.56690 2.24154 2.50368 2.81541 3.08833 3.52107 3.74302 3.88523 3.95766 4.15482 4.25416 4.39761 4.60497 4.67816 4.81946 4.84513 4.89541 5.00918 5.06275 5.21342 5.25585 5.34042 5.52943 5.82047 5.91215 6.25215 6.37074 6.89999 7.58416 8.53934 8.71739 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051905 B = 0.008282 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.313725 B = 3379.836550 C = 3388.864690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.076 0.924 4 O -0.381 6.381 5 C 0.055 3.945 6 C -0.154 4.154 7 C 0.150 3.850 8 C -0.146 4.146 9 N -0.746 5.746 10 C 0.546 3.454 11 O -0.612 6.612 12 C -0.576 4.576 13 H 0.082 0.918 14 C 0.032 3.968 15 N -0.819 5.819 16 Si 0.992 3.008 17 H -0.249 1.249 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.114 0.886 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.391 0.609 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 3.972 -9.047 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.094 0.906 4 O -0.301 6.301 5 C -0.021 4.021 6 C -0.194 4.194 7 C 0.062 3.938 8 C -0.204 4.204 9 N -0.401 5.401 10 C 0.349 3.651 11 O -0.498 6.498 12 C -0.613 4.613 13 H 0.100 0.900 14 C -0.183 4.183 15 N -0.449 5.449 16 Si 0.812 3.188 17 H -0.172 1.172 18 H -0.195 1.195 19 H -0.195 1.195 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.132 0.868 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.225 0.775 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.379 2.992 -8.912 10.370 hybrid contribution 0.794 0.522 0.859 1.281 sum -3.585 3.513 -8.053 9.489 Atomic orbital electron populations 1.21982 0.91542 1.03419 1.03125 1.22989 0.96739 0.95293 0.83153 0.90581 1.88813 1.40175 1.67938 1.33128 1.23561 0.87213 0.96774 0.94583 1.23377 1.00409 0.98919 0.96647 1.21417 0.90951 0.90484 0.90907 1.22167 0.96846 1.01057 1.00328 1.46002 1.55405 1.13765 1.24922 1.18398 0.79372 0.87486 0.79810 1.90532 1.65082 1.20709 1.73471 1.21459 1.33510 0.98698 1.07586 0.89994 1.26860 0.96214 0.96594 0.98682 1.70175 1.36524 1.16973 1.21196 0.85049 0.77428 0.78784 0.77514 1.17248 1.19484 1.19513 0.90364 0.90627 0.91415 0.86847 0.92272 0.92941 0.90549 0.92164 0.90513 0.94065 0.77543 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.40 71.98 0.61 -2.89 16 2 C 0.08 2.29 3.86 30.97 0.12 2.41 16 3 H 0.08 2.16 7.48 -2.39 -0.02 2.14 16 4 O -0.38 -11.77 11.19 -148.98 -1.67 -13.44 16 5 C 0.05 1.67 7.72 72.67 0.56 2.23 16 6 C -0.15 -5.88 5.95 31.90 0.19 -5.69 16 7 C 0.15 5.66 0.95 4.60 0.00 5.66 16 8 C -0.15 -5.58 7.17 71.98 0.52 -5.06 16 9 N -0.75 -32.65 5.15 -422.66 -2.18 -34.83 16 10 C 0.55 30.54 6.95 86.36 0.60 31.14 16 11 O -0.61 -38.83 12.01 -4.33 -0.05 -38.88 16 12 C -0.58 -32.16 9.54 24.83 0.24 -31.92 16 13 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 14 C 0.03 1.74 5.50 85.30 0.47 2.21 16 15 N -0.82 -49.43 11.83 21.84 0.26 -49.17 16 16 Si 0.99 40.83 29.56 68.60 2.03 42.86 16 17 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H 0.08 1.82 6.87 -2.39 -0.02 1.80 16 21 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.07 1.63 6.67 -2.38 -0.02 1.62 16 23 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 2.42 6.97 -2.39 -0.02 2.40 16 26 H 0.08 2.77 7.87 -2.39 -0.02 2.75 16 27 H 0.06 2.13 6.84 -2.38 -0.02 2.11 16 28 H 0.08 2.46 6.72 -2.39 -0.02 2.44 16 29 H 0.04 1.98 6.04 -2.39 -0.01 1.97 16 30 H 0.39 15.02 8.08 -92.71 -0.75 14.27 16 31 H 0.27 14.95 8.29 -92.71 -0.77 14.18 16 Total: -1.00 -70.41 251.20 2.08 -68.33 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.39 Total: 27.04 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 3.30 Total: -1.90 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.92 Total: -84.00 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -1.72 Total: -52.32 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -70.41 2.08 -68.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229019022.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.250 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds