Wall clock time and date at job start Sun Mar 29 2020 21:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.87222 * 2 1 4 4 O 1.43749 * 109.87535 * 121.15927 * 2 1 3 5 5 C 1.44392 * 106.97028 * 145.93631 * 4 2 1 6 6 C 1.54991 * 103.49012 * 319.93666 * 5 4 2 7 7 C 1.54096 * 109.87660 * 238.98959 * 2 1 3 8 8 C 1.53000 * 110.60494 * 357.27868 * 7 2 1 9 9 N 1.46497 * 110.48727 * 119.87253 * 7 2 1 10 10 C 1.34779 * 120.00091 * 176.22012 * 9 7 2 11 11 O 1.21686 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.46379 * 119.99821 * 180.02562 * 10 9 7 13 13 H 1.08002 * 120.00288 * 359.97438 * 12 10 9 14 14 C 1.40046 * 119.99770 * 180.02562 * 12 10 9 15 15 N 1.30671 * 120.00226 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99895 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47323 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.46897 * 119.99811 * 16 14 12 19 19 H 1.48497 * 109.47440 * 239.99444 * 16 14 12 20 20 H 1.09000 * 109.47357 * 181.01092 * 1 2 3 21 21 H 1.09002 * 109.47272 * 301.00542 * 1 2 3 22 22 H 1.08995 * 109.47447 * 61.01056 * 1 2 3 23 23 H 1.09000 * 110.61094 * 201.43672 * 5 4 2 24 24 H 1.08998 * 110.61686 * 78.44159 * 5 4 2 25 25 H 1.08996 * 110.90945 * 278.82529 * 6 5 4 26 26 H 1.09004 * 110.90588 * 155.21794 * 6 5 4 27 27 H 1.08998 * 109.46618 * 303.71456 * 8 7 2 28 28 H 1.09007 * 109.46480 * 63.71069 * 8 7 2 29 29 H 1.08991 * 109.47476 * 183.71201 * 8 7 2 30 30 H 0.97006 * 119.99974 * 356.21943 * 9 7 2 31 31 H 0.96999 * 120.00335 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 1.1568 5 6 3.2379 -1.3652 0.7629 6 6 2.9194 -1.8907 -0.6600 7 6 2.0539 -0.7466 -1.2420 8 6 0.8917 -1.3163 -2.0579 9 7 2.8710 0.1446 -2.0692 10 6 3.4897 -0.3337 -3.1670 11 8 3.3691 -1.5057 -3.4713 12 6 4.3066 0.5567 -3.9931 13 1 4.4132 1.5970 -3.7233 14 6 4.9489 0.0598 -5.1340 15 7 4.8195 -1.1987 -5.4608 16 14 5.9908 1.1962 -6.1887 17 1 5.9758 2.5628 -5.6079 18 1 7.3867 0.6911 -6.2308 19 1 5.4381 1.2383 -7.5664 20 1 -0.3634 -1.0275 0.0181 21 1 -0.3634 0.5294 0.8808 22 1 -0.3634 0.4980 -0.8988 23 1 3.4583 -2.1928 1.4373 24 1 4.0685 -0.6600 0.7347 25 1 2.3539 -2.8213 -0.6135 26 1 3.8331 -2.0208 -1.2401 27 1 0.2838 -1.9609 -1.4230 28 1 0.2793 -0.4985 -2.4378 29 1 1.2839 -1.8952 -2.8938 30 1 2.9668 1.0790 -1.8268 31 1 5.2647 -1.5430 -6.2509 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229019044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:07 Heat of formation + Delta-G solvation = -87.071389 kcal Electronic energy + Delta-G solvation = -14959.404392 eV Core-core repulsion = 12433.764011 eV Total energy + Delta-G solvation = -2525.640381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.79295 -36.90209 -33.88691 -32.41798 -31.34990 -30.30515 -27.07415 -26.16460 -24.35723 -21.98845 -20.20873 -18.49989 -17.28346 -16.08542 -15.46267 -15.26474 -14.95980 -13.98322 -13.76216 -13.43617 -12.87336 -12.62054 -12.12196 -12.00947 -11.66006 -11.43135 -11.13049 -11.05875 -10.83460 -10.62442 -10.46557 -10.38581 -10.18923 -10.08857 -9.33185 -8.87682 -7.55040 -7.52852 -6.20167 -4.66201 3.10925 3.19659 3.23715 4.06982 4.18188 4.55377 4.72738 5.04080 5.21686 5.37212 5.46071 5.62237 5.66719 5.80295 5.81430 6.03930 6.09926 6.19756 6.31142 6.41984 6.44757 6.53131 6.83923 7.07781 7.19476 7.41493 7.88281 8.11029 8.31278 9.00821 9.51489 10.57736 10.76843 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051838 B = 0.008305 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.016785 B = 3370.470566 C = 3381.121402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.066 0.934 4 O -0.381 6.381 5 C 0.046 3.954 6 C -0.152 4.152 7 C 0.161 3.839 8 C -0.151 4.151 9 N -0.757 5.757 10 C 0.557 3.443 11 O -0.573 6.573 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.379 0.621 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 2.465 7.783 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.084 0.916 4 O -0.300 6.300 5 C -0.031 4.031 6 C -0.191 4.191 7 C 0.073 3.927 8 C -0.209 4.209 9 N -0.413 5.413 10 C 0.362 3.638 11 O -0.456 6.456 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.396 5.396 16 Si 0.730 3.270 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.211 0.789 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.523 1.439 7.631 8.987 hybrid contribution 0.749 1.068 -0.623 1.446 sum -3.774 2.507 7.008 8.345 Atomic orbital electron populations 1.21988 0.93808 1.02829 1.01797 1.22961 0.95017 0.95555 0.85174 0.91571 1.88807 1.40118 1.67844 1.33221 1.23569 0.87335 0.96019 0.96137 1.23447 1.02389 0.98215 0.95058 1.21143 0.91249 0.90375 0.89961 1.22230 0.96687 1.00835 1.01193 1.46317 1.54506 1.11061 1.29410 1.18146 0.79027 0.88160 0.78505 1.90569 1.65339 1.17957 1.71687 1.20932 1.31308 0.96385 1.09685 0.91543 1.25682 0.95387 0.94935 0.97126 1.70019 1.34196 1.13480 1.21874 0.86350 0.79730 0.81024 0.79854 1.18830 1.20196 1.20198 0.91562 0.92666 0.90999 0.89615 0.92391 0.91054 0.88566 0.93087 0.93081 0.89919 0.78900 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.41 37.16 0.31 -1.70 16 2 C 0.07 1.16 3.86 -26.16 -0.10 1.05 16 3 H 0.07 1.04 7.48 -51.93 -0.39 0.65 16 4 O -0.38 -6.46 11.19 -35.23 -0.39 -6.85 16 5 C 0.05 0.75 7.72 38.21 0.29 1.04 16 6 C -0.15 -2.92 5.89 -24.72 -0.15 -3.06 16 7 C 0.16 3.08 0.95 -130.29 -0.12 2.96 16 8 C -0.15 -2.87 7.20 37.16 0.27 -2.60 16 9 N -0.76 -16.52 5.15 -47.58 -0.25 -16.77 16 10 C 0.56 15.19 6.95 -12.98 -0.09 15.10 16 11 O -0.57 -17.38 11.96 5.20 0.06 -17.32 16 12 C -0.55 -15.10 9.54 -35.63 -0.34 -15.44 16 13 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 14 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 15 N -0.77 -22.50 11.83 55.55 0.66 -21.85 16 16 Si 0.91 19.94 29.56 -169.99 -5.02 14.91 16 17 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H 0.07 0.90 6.62 -51.93 -0.34 0.55 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.93 6.93 -51.93 -0.36 0.57 16 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 1.30 7.87 -51.93 -0.41 0.89 16 26 H 0.10 2.18 6.64 -51.93 -0.34 1.84 16 27 H 0.05 0.83 6.61 -51.93 -0.34 0.49 16 28 H 0.05 0.91 6.96 -51.93 -0.36 0.55 16 29 H 0.08 1.90 6.36 -51.93 -0.33 1.57 16 30 H 0.38 7.42 8.09 -40.82 -0.33 7.09 16 31 H 0.27 7.13 8.29 -40.82 -0.34 6.80 16 LS Contribution 251.17 15.07 3.79 3.79 Total: -1.00 -31.78 251.17 -5.21 -36.99 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.03 Total: 7.42 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.02 Total: -0.32 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.41 Total: -38.61 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.33 Total: -24.17 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.78 -5.21 -36.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229019044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.084 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds