Wall clock time and date at job start Sun Mar 29 2020 21:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.87222 * 2 1 4 4 O 1.43749 * 109.87535 * 121.15927 * 2 1 3 5 5 C 1.44392 * 106.97028 * 145.93631 * 4 2 1 6 6 C 1.54991 * 103.49012 * 319.93666 * 5 4 2 7 7 C 1.54096 * 109.87660 * 238.98959 * 2 1 3 8 8 C 1.53000 * 110.60494 * 357.27868 * 7 2 1 9 9 N 1.46497 * 110.48727 * 119.87253 * 7 2 1 10 10 C 1.34779 * 120.00091 * 176.22012 * 9 7 2 11 11 O 1.21686 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.46379 * 119.99821 * 180.02562 * 10 9 7 13 13 H 1.08002 * 120.00288 * 359.97438 * 12 10 9 14 14 C 1.40046 * 119.99770 * 180.02562 * 12 10 9 15 15 N 1.30671 * 120.00226 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99895 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47323 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.46897 * 119.99811 * 16 14 12 19 19 H 1.48497 * 109.47440 * 239.99444 * 16 14 12 20 20 H 1.09000 * 109.47357 * 181.01092 * 1 2 3 21 21 H 1.09002 * 109.47272 * 301.00542 * 1 2 3 22 22 H 1.08995 * 109.47447 * 61.01056 * 1 2 3 23 23 H 1.09000 * 110.61094 * 201.43672 * 5 4 2 24 24 H 1.08998 * 110.61686 * 78.44159 * 5 4 2 25 25 H 1.08996 * 110.90945 * 278.82529 * 6 5 4 26 26 H 1.09004 * 110.90588 * 155.21794 * 6 5 4 27 27 H 1.08998 * 109.46618 * 303.71456 * 8 7 2 28 28 H 1.09007 * 109.46480 * 63.71069 * 8 7 2 29 29 H 1.08991 * 109.47476 * 183.71201 * 8 7 2 30 30 H 0.97006 * 119.99974 * 356.21943 * 9 7 2 31 31 H 0.96999 * 120.00335 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 1.1568 5 6 3.2379 -1.3652 0.7629 6 6 2.9194 -1.8907 -0.6600 7 6 2.0539 -0.7466 -1.2420 8 6 0.8917 -1.3163 -2.0579 9 7 2.8710 0.1446 -2.0692 10 6 3.4897 -0.3337 -3.1670 11 8 3.3691 -1.5057 -3.4713 12 6 4.3066 0.5567 -3.9931 13 1 4.4132 1.5970 -3.7233 14 6 4.9489 0.0598 -5.1340 15 7 4.8195 -1.1987 -5.4608 16 14 5.9908 1.1962 -6.1887 17 1 5.9758 2.5628 -5.6079 18 1 7.3867 0.6911 -6.2308 19 1 5.4381 1.2383 -7.5664 20 1 -0.3634 -1.0275 0.0181 21 1 -0.3634 0.5294 0.8808 22 1 -0.3634 0.4980 -0.8988 23 1 3.4583 -2.1928 1.4373 24 1 4.0685 -0.6600 0.7347 25 1 2.3539 -2.8213 -0.6135 26 1 3.8331 -2.0208 -1.2401 27 1 0.2838 -1.9609 -1.4230 28 1 0.2793 -0.4985 -2.4378 29 1 1.2839 -1.8952 -2.8938 30 1 2.9668 1.0790 -1.8268 31 1 5.2647 -1.5430 -6.2509 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229019044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:07 Heat of formation + Delta-G solvation = -110.964816 kcal Electronic energy + Delta-G solvation = -14960.440489 eV Core-core repulsion = 12433.764011 eV Total energy + Delta-G solvation = -2526.676478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28995 -38.79731 -35.58471 -34.46719 -32.82472 -31.95465 -28.59645 -28.10620 -25.77762 -23.50252 -21.95831 -20.15388 -19.18950 -17.71294 -17.31845 -16.75138 -16.31893 -15.79304 -15.32641 -14.97944 -14.55004 -14.41647 -13.64476 -13.48744 -13.24644 -13.06159 -12.80640 -12.62710 -12.51973 -12.29320 -12.11152 -11.95952 -11.83877 -11.55783 -10.92178 -10.66433 -9.67165 -9.42976 -8.25972 -6.82386 1.39108 1.39952 1.56651 2.24141 2.50575 2.81692 3.08830 3.52924 3.72902 3.89249 3.95848 4.15703 4.25380 4.39643 4.60405 4.67838 4.82404 4.84207 4.89676 5.01188 5.06676 5.22476 5.25293 5.34095 5.50512 5.81541 5.91402 6.25219 6.37187 6.89993 7.58439 8.53959 8.71739 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051838 B = 0.008305 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.016785 B = 3370.470566 C = 3381.121402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.076 0.924 4 O -0.381 6.381 5 C 0.055 3.945 6 C -0.155 4.155 7 C 0.150 3.850 8 C -0.143 4.143 9 N -0.746 5.746 10 C 0.546 3.454 11 O -0.612 6.612 12 C -0.576 4.576 13 H 0.082 0.918 14 C 0.032 3.968 15 N -0.819 5.819 16 Si 0.992 3.008 17 H -0.249 1.249 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.113 0.887 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.391 0.609 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 4.129 8.745 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.094 0.906 4 O -0.300 6.300 5 C -0.022 4.022 6 C -0.194 4.194 7 C 0.062 3.938 8 C -0.201 4.201 9 N -0.401 5.401 10 C 0.349 3.651 11 O -0.498 6.498 12 C -0.613 4.613 13 H 0.100 0.900 14 C -0.183 4.183 15 N -0.449 5.449 16 Si 0.812 3.188 17 H -0.172 1.172 18 H -0.195 1.195 19 H -0.195 1.195 20 H 0.086 0.914 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.131 0.869 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.225 0.775 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.866 3.133 8.639 10.399 hybrid contribution 0.806 0.517 -0.864 1.289 sum -4.060 3.650 7.776 9.501 Atomic orbital electron populations 1.21988 0.91465 1.03441 1.03190 1.22985 0.96774 0.95279 0.83136 0.90584 1.88814 1.40139 1.67884 1.33205 1.23558 0.87198 0.96745 0.94651 1.23372 1.00592 0.98854 0.96544 1.21418 0.90946 0.90499 0.90920 1.22140 0.96928 1.01020 1.00057 1.46007 1.53812 1.11972 1.28326 1.18396 0.79295 0.87701 0.79671 1.90540 1.66668 1.19532 1.73080 1.21460 1.31945 0.97288 1.10573 0.89994 1.26857 0.96454 0.96618 0.98420 1.70175 1.35751 1.16054 1.22901 0.85049 0.77397 0.78837 0.77493 1.17244 1.19512 1.19493 0.91389 0.90641 0.90250 0.86894 0.92414 0.90594 0.92787 0.90305 0.92032 0.94576 0.77528 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.41 71.98 0.61 -2.84 16 2 C 0.08 2.29 3.86 30.96 0.12 2.41 16 3 H 0.08 2.16 7.48 -2.39 -0.02 2.14 16 4 O -0.38 -11.85 11.19 -148.98 -1.67 -13.52 16 5 C 0.05 1.69 7.72 72.66 0.56 2.25 16 6 C -0.15 -5.96 5.89 31.90 0.19 -5.77 16 7 C 0.15 5.64 0.95 4.59 0.00 5.64 16 8 C -0.14 -5.40 7.20 71.98 0.52 -4.88 16 9 N -0.75 -32.65 5.15 -422.67 -2.18 -34.83 16 10 C 0.55 30.55 6.95 86.36 0.60 31.15 16 11 O -0.61 -38.87 11.96 -4.30 -0.05 -38.92 16 12 C -0.58 -32.17 9.54 24.83 0.24 -31.94 16 13 H 0.08 4.16 7.85 -2.91 -0.02 4.13 16 14 C 0.03 1.74 5.50 85.30 0.47 2.21 16 15 N -0.82 -49.47 11.83 21.83 0.26 -49.21 16 16 Si 0.99 40.85 29.56 68.60 2.03 42.88 16 17 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 18 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H 0.07 1.61 6.62 -2.39 -0.02 1.60 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.08 1.80 6.93 -2.39 -0.02 1.78 16 23 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 2.79 7.87 -2.39 -0.02 2.77 16 26 H 0.05 2.55 6.64 -2.38 -0.02 2.53 16 27 H 0.08 2.47 6.61 -2.39 -0.02 2.46 16 28 H 0.06 2.13 6.96 -2.38 -0.02 2.12 16 29 H 0.04 1.70 6.36 -2.39 -0.02 1.68 16 30 H 0.39 15.00 8.09 -92.70 -0.75 14.25 16 31 H 0.27 14.96 8.29 -92.71 -0.77 14.19 16 Total: -1.00 -70.54 251.17 2.08 -68.46 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.39 Total: 26.90 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 3.30 Total: -1.77 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -1.92 Total: -84.03 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -1.72 Total: -52.44 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -70.54 2.08 -68.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229019044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.501 kcal (2) G-P(sol) polarization free energy of solvation -70.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds