Wall clock time and date at job start Sun Mar 29 2020 21:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.44734 * 2 1 4 4 C 1.53047 * 109.45630 * 240.04225 * 2 1 3 5 5 C 1.53189 * 109.31054 * 301.34438 * 4 2 1 6 6 N 1.46929 * 108.77647 * 305.36749 * 5 4 2 7 7 C 1.36947 * 120.62735 * 233.88585 * 6 5 4 8 8 H 1.07998 * 119.99808 * 215.85816 * 7 6 5 9 9 C 1.38812 * 120.00006 * 35.86873 * 7 6 5 10 10 N 1.31621 * 119.99945 * 12.61631 * 9 7 6 11 11 Si 1.86794 * 119.99857 * 192.61961 * 9 7 6 12 12 H 1.48509 * 109.47187 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47519 * 119.99479 * 11 9 7 14 14 H 1.48498 * 109.47168 * 239.99884 * 11 9 7 15 15 C 1.46924 * 118.74139 * 53.60859 * 6 5 4 16 16 H 1.08998 * 109.58479 * 66.32151 * 15 6 5 17 17 C 1.50696 * 109.58927 * 186.60731 * 15 6 5 18 18 O 1.20836 * 119.99890 * 36.60779 * 17 15 6 19 19 O 1.34228 * 120.00222 * 216.60614 * 17 15 6 20 20 C 1.53041 * 109.46226 * 119.97363 * 2 1 3 21 21 H 1.09002 * 109.46396 * 300.02641 * 1 2 3 22 22 H 1.09000 * 109.47152 * 60.02662 * 1 2 3 23 23 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.49582 * 61.29390 * 4 2 1 25 25 H 1.08996 * 109.49740 * 181.39410 * 4 2 1 26 26 H 1.09003 * 109.59061 * 185.58130 * 5 4 2 27 27 H 1.09001 * 109.59370 * 65.15146 * 5 4 2 28 28 H 0.97002 * 119.99460 * 180.02562 * 10 9 7 29 29 H 0.96703 * 116.99916 * 179.97438 * 19 17 15 30 30 H 1.08999 * 109.49273 * 298.69974 * 20 2 1 31 31 H 1.08996 * 109.49427 * 178.60496 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2503 5 6 1.4995 -2.1540 -1.2646 6 7 1.8625 -2.8089 -0.0004 7 6 2.5314 -4.0038 -0.0006 8 1 2.3155 -4.7436 0.7560 9 6 3.4871 -4.2641 -0.9731 10 7 3.9307 -3.2887 -1.7375 11 14 4.1435 -5.9985 -1.1970 12 1 3.4889 -6.9055 -0.2201 13 1 3.8526 -6.4637 -2.5768 14 1 5.6112 -6.0053 -0.9714 15 6 1.4996 -2.1543 1.2640 16 1 0.4148 -2.1371 1.3683 17 6 2.1061 -2.9115 2.4172 18 8 3.2020 -3.4079 2.3044 19 8 1.4290 -3.0345 3.5696 20 6 2.0400 -0.7209 1.2500 21 1 -0.3632 0.5143 0.8898 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3634 -1.0277 0.0005 24 1 1.6957 -0.1932 -2.1399 25 1 3.1295 -0.7427 -1.2386 26 1 1.9381 -2.7016 -2.0988 27 1 0.4145 -2.1346 -1.3676 28 1 4.5983 -3.4707 -2.4174 29 1 1.8587 -3.5294 4.2806 30 1 1.6959 -0.1936 2.1397 31 1 3.1297 -0.7429 1.2381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229294757.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:33 Heat of formation + Delta-G solvation = -73.834617 kcal Electronic energy + Delta-G solvation = -15378.796935 eV Core-core repulsion = 12853.730543 eV Total energy + Delta-G solvation = -2525.066391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63958 -37.62912 -35.24616 -33.47868 -31.10769 -29.92197 -27.02984 -24.97131 -23.57898 -21.87193 -20.33136 -18.08827 -17.17401 -16.79741 -15.65725 -14.81852 -14.47615 -14.18558 -13.57955 -13.23046 -12.96570 -12.80793 -12.60029 -11.88794 -11.32163 -11.03458 -10.87955 -10.75710 -10.65278 -10.43743 -10.26297 -10.15529 -10.03307 -9.65845 -9.32728 -9.17437 -8.32464 -6.51431 -5.73776 -3.26134 3.13783 3.41791 3.49193 3.52339 3.81706 4.54236 5.36336 5.43806 5.54754 5.60919 5.64152 6.00084 6.11417 6.13479 6.21915 6.32311 6.40145 6.57392 6.62832 6.77825 6.85217 6.94784 7.00228 7.25671 7.54546 7.65988 7.86721 8.49282 8.83829 9.21978 9.78569 10.36821 11.32151 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.015102 C = 0.010815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.713737 B = 1853.671856 C = 2588.486096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.055 0.945 4 C -0.125 4.125 5 C 0.170 3.830 6 N -0.577 5.577 7 C -0.235 4.235 8 H 0.062 0.938 9 C 0.013 3.987 10 N -0.895 5.895 11 Si 0.904 3.096 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.181 3.819 16 H 0.060 0.940 17 C 0.463 3.537 18 O -0.472 6.472 19 O -0.535 6.535 20 C -0.119 4.119 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.007 0.993 28 H 0.252 0.748 29 H 0.394 0.606 30 H 0.051 0.949 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 4.870 4.460 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.163 4.163 5 C 0.046 3.954 6 N -0.303 5.303 7 C -0.365 4.365 8 H 0.079 0.921 9 C -0.186 4.186 10 N -0.539 5.539 11 Si 0.735 3.265 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.074 3.926 16 H 0.077 0.923 17 C 0.303 3.697 18 O -0.354 6.354 19 O -0.348 6.348 20 C -0.158 4.158 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.251 0.749 30 H 0.070 0.930 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.635 4.919 3.976 8.471 hybrid contribution 0.938 -1.106 0.421 1.510 sum -4.697 3.813 4.396 7.478 Atomic orbital electron populations 1.21937 0.96129 1.02240 1.00300 1.20989 0.95101 0.98032 0.96039 0.92630 1.21951 1.02504 0.97552 0.94335 1.20891 0.93755 0.91260 0.89524 1.44220 1.66740 1.21574 0.97769 1.19041 1.14219 0.90276 1.12955 0.92080 1.25173 0.95697 0.97394 1.00375 1.69958 1.30772 1.29906 1.23233 0.86191 0.78616 0.84494 0.77236 1.20362 1.21675 1.21677 1.20349 0.97128 0.90551 0.84566 0.92288 1.23847 0.84274 0.78960 0.82626 1.90733 1.20923 1.43387 1.80394 1.84596 1.53187 1.71986 1.24990 1.21941 1.01554 0.95064 0.97274 0.93708 0.93363 0.91697 0.93899 0.90542 0.88700 0.97542 0.93783 0.74919 0.93036 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.44 37.16 0.31 -1.97 16 2 C -0.08 -1.47 3.19 -90.57 -0.29 -1.76 16 3 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -2.56 5.62 -26.61 -0.15 -2.71 16 5 C 0.17 3.93 5.17 -3.71 -0.02 3.92 16 6 N -0.58 -14.44 2.95 -166.09 -0.49 -14.93 16 7 C -0.24 -6.60 7.24 -15.05 -0.11 -6.71 16 8 H 0.06 1.78 6.72 -52.49 -0.35 1.43 16 9 C 0.01 0.37 5.02 -17.43 -0.09 0.28 16 10 N -0.89 -25.73 11.09 55.49 0.62 -25.11 16 11 Si 0.90 22.65 29.57 -169.99 -5.03 17.62 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 C 0.18 3.89 2.90 -68.75 -0.20 3.69 16 16 H 0.06 1.18 6.70 -51.93 -0.35 0.84 16 17 C 0.46 10.05 6.63 36.00 0.24 10.29 16 18 O -0.47 -12.05 15.02 -18.76 -0.28 -12.33 16 19 O -0.54 -9.11 13.42 -39.25 -0.53 -9.64 16 20 C -0.12 -2.29 4.90 -26.61 -0.13 -2.42 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.08 4.98 -51.93 -0.26 0.82 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.83 7.99 -51.93 -0.42 1.41 16 26 H 0.10 2.48 5.85 -51.93 -0.30 2.18 16 27 H 0.01 0.14 6.69 -51.93 -0.35 -0.20 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 4.88 9.10 45.56 0.41 5.29 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 247.69 15.07 3.73 3.73 Total: -1.00 -31.38 247.69 -5.69 -37.07 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -3.28 Total: 1.00 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.43 Total: 2.59 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.13 Total: -40.04 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.81 Total: -21.97 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.38 -5.69 -37.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229294757.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.765 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds