Wall clock time and date at job start Sun Mar 29 2020 21:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.44734 * 2 1 4 4 C 1.53047 * 109.45630 * 240.04225 * 2 1 3 5 5 C 1.53189 * 109.31054 * 301.34438 * 4 2 1 6 6 N 1.46929 * 108.77647 * 305.36749 * 5 4 2 7 7 C 1.36947 * 120.62735 * 233.88585 * 6 5 4 8 8 H 1.07998 * 119.99808 * 215.85816 * 7 6 5 9 9 C 1.38812 * 120.00006 * 35.86873 * 7 6 5 10 10 N 1.31621 * 119.99945 * 12.61631 * 9 7 6 11 11 Si 1.86794 * 119.99857 * 192.61961 * 9 7 6 12 12 H 1.48509 * 109.47187 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47519 * 119.99479 * 11 9 7 14 14 H 1.48498 * 109.47168 * 239.99884 * 11 9 7 15 15 C 1.46924 * 118.74139 * 53.60859 * 6 5 4 16 16 H 1.08998 * 109.58479 * 66.32151 * 15 6 5 17 17 C 1.50696 * 109.58927 * 186.60731 * 15 6 5 18 18 O 1.20836 * 119.99890 * 36.60779 * 17 15 6 19 19 O 1.34228 * 120.00222 * 216.60614 * 17 15 6 20 20 C 1.53041 * 109.46226 * 119.97363 * 2 1 3 21 21 H 1.09002 * 109.46396 * 300.02641 * 1 2 3 22 22 H 1.09000 * 109.47152 * 60.02662 * 1 2 3 23 23 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.49582 * 61.29390 * 4 2 1 25 25 H 1.08996 * 109.49740 * 181.39410 * 4 2 1 26 26 H 1.09003 * 109.59061 * 185.58130 * 5 4 2 27 27 H 1.09001 * 109.59370 * 65.15146 * 5 4 2 28 28 H 0.97002 * 119.99460 * 180.02562 * 10 9 7 29 29 H 0.96703 * 116.99916 * 179.97438 * 19 17 15 30 30 H 1.08999 * 109.49273 * 298.69974 * 20 2 1 31 31 H 1.08996 * 109.49427 * 178.60496 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2503 5 6 1.4995 -2.1540 -1.2646 6 7 1.8625 -2.8089 -0.0004 7 6 2.5314 -4.0038 -0.0006 8 1 2.3155 -4.7436 0.7560 9 6 3.4871 -4.2641 -0.9731 10 7 3.9307 -3.2887 -1.7375 11 14 4.1435 -5.9985 -1.1970 12 1 3.4889 -6.9055 -0.2201 13 1 3.8526 -6.4637 -2.5768 14 1 5.6112 -6.0053 -0.9714 15 6 1.4996 -2.1543 1.2640 16 1 0.4148 -2.1371 1.3683 17 6 2.1061 -2.9115 2.4172 18 8 3.2020 -3.4079 2.3044 19 8 1.4290 -3.0345 3.5696 20 6 2.0400 -0.7209 1.2500 21 1 -0.3632 0.5143 0.8898 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3634 -1.0277 0.0005 24 1 1.6957 -0.1932 -2.1399 25 1 3.1295 -0.7427 -1.2386 26 1 1.9381 -2.7016 -2.0988 27 1 0.4145 -2.1346 -1.3676 28 1 4.5983 -3.4707 -2.4174 29 1 1.8587 -3.5294 4.2806 30 1 1.6959 -0.1936 2.1397 31 1 3.1297 -0.7429 1.2381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229294757.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:32 Heat of formation + Delta-G solvation = -95.531999 kcal Electronic energy + Delta-G solvation = -15379.737804 eV Core-core repulsion = 12853.730543 eV Total energy + Delta-G solvation = -2526.007261 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.33048 -39.24968 -36.87415 -35.34068 -32.93352 -31.72454 -28.60687 -26.67298 -25.34399 -23.65969 -21.97524 -19.79396 -18.79622 -18.64285 -17.45486 -16.61984 -16.21715 -15.90788 -15.24924 -14.91810 -14.56452 -14.47221 -14.20306 -13.56807 -13.10393 -12.77172 -12.72113 -12.51666 -12.30217 -12.16234 -12.02201 -11.86186 -11.67826 -11.36451 -11.03162 -10.92444 -10.35662 -8.48521 -7.82908 -5.37581 1.39012 1.43071 1.44720 1.52822 2.28006 2.50906 3.32814 3.63846 4.04616 4.14128 4.16796 4.45193 4.53665 4.70693 4.83289 4.86806 4.94759 5.09730 5.17582 5.22392 5.28600 5.44949 5.53148 5.65192 5.76928 5.80308 5.91606 6.45097 7.18302 7.25830 7.77792 8.31869 9.19293 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.015102 C = 0.010815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.713737 B = 1853.671856 C = 2588.486096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 H 0.078 0.922 4 C -0.116 4.116 5 C 0.169 3.831 6 N -0.595 5.595 7 C -0.236 4.236 8 H 0.046 0.954 9 C -0.038 4.038 10 N -0.917 5.917 11 Si 0.956 3.044 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.297 1.297 15 C 0.173 3.827 16 H 0.085 0.915 17 C 0.469 3.531 18 O -0.521 6.521 19 O -0.515 6.515 20 C -0.113 4.113 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.248 0.752 29 H 0.418 0.582 30 H 0.087 0.913 31 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 5.938 5.432 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.045 3.955 6 N -0.321 5.321 7 C -0.367 4.367 8 H 0.063 0.937 9 C -0.234 4.234 10 N -0.562 5.562 11 Si 0.785 3.215 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.224 1.224 15 C 0.066 3.934 16 H 0.102 0.898 17 C 0.311 3.689 18 O -0.407 6.407 19 O -0.329 6.329 20 C -0.152 4.152 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.278 0.722 30 H 0.105 0.895 31 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.414 5.991 4.981 10.755 hybrid contribution 1.394 -1.420 0.242 2.004 sum -6.020 4.571 5.223 9.188 Atomic orbital electron populations 1.21863 0.93560 1.01938 1.02487 1.20994 0.97101 0.98313 0.93329 0.90399 1.21798 0.99788 0.96764 0.97195 1.20846 0.94633 0.92105 0.87903 1.44314 1.66631 1.21556 0.99642 1.19034 1.13944 0.91528 1.12159 0.93667 1.25768 0.96515 1.00267 1.00859 1.70093 1.31360 1.30988 1.23754 0.85392 0.77398 0.81341 0.77369 1.20161 1.20834 1.22449 1.20546 0.98294 0.91425 0.83109 0.89801 1.23906 0.83543 0.77849 0.83606 1.90725 1.23005 1.45448 1.81567 1.84508 1.52156 1.71844 1.24381 1.21893 0.99284 0.94202 0.99806 0.91146 0.91684 0.93129 0.91774 0.94741 0.92319 0.95341 0.94311 0.72166 0.89475 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.44 71.98 0.61 -3.11 16 2 C -0.08 -2.57 3.19 -10.76 -0.03 -2.60 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.12 -4.70 5.62 30.67 0.17 -4.53 16 5 C 0.17 7.80 5.17 86.36 0.45 8.25 16 6 N -0.59 -29.76 2.95 -679.37 -2.01 -31.77 16 7 C -0.24 -13.46 7.24 84.03 0.61 -12.85 16 8 H 0.05 2.68 6.72 -2.91 -0.02 2.66 16 9 C -0.04 -2.18 5.02 84.86 0.43 -1.75 16 10 N -0.92 -54.38 11.09 21.65 0.24 -54.14 16 11 Si 0.96 47.56 29.57 68.60 2.03 49.59 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 15 C 0.17 7.13 2.90 44.23 0.13 7.26 16 16 H 0.08 3.08 6.70 -2.39 -0.02 3.07 16 17 C 0.47 19.78 6.63 71.23 0.47 20.25 16 18 O -0.52 -26.77 15.02 21.93 0.33 -26.44 16 19 O -0.52 -16.07 13.42 -51.40 -0.69 -16.76 16 20 C -0.11 -4.10 4.90 30.67 0.15 -3.95 16 21 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.48 4.98 -2.39 -0.01 1.47 16 24 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 25 H 0.03 1.66 7.99 -2.39 -0.02 1.65 16 26 H 0.06 3.14 5.85 -2.39 -0.01 3.13 16 27 H 0.03 1.18 6.69 -2.39 -0.02 1.17 16 28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.42 9.13 9.10 -74.06 -0.67 8.46 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -69.34 247.69 3.34 -65.99 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.46 Total: 6.57 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 2.98 Total: 6.96 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.76 Total: -85.91 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.36 Total: -43.20 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -69.34 3.34 -65.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229294757.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.538 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds