Wall clock time and date at job start Sun Mar 29 2020 21:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.46472 * 2 1 4 4 C 1.53039 * 109.45986 * 119.97995 * 2 1 3 5 5 C 1.53196 * 109.31168 * 181.38252 * 4 2 1 6 6 N 1.46925 * 108.77549 * 305.35908 * 5 4 2 7 7 C 1.36935 * 120.63295 * 233.58889 * 6 5 4 8 8 H 1.07998 * 119.99889 * 213.86248 * 7 6 5 9 9 C 1.38806 * 119.99773 * 33.85473 * 7 6 5 10 10 N 1.31616 * 120.00163 * 15.32786 * 9 7 6 11 11 Si 1.86800 * 120.00022 * 195.31920 * 9 7 6 12 12 H 1.48498 * 109.47556 * 270.00814 * 11 9 7 13 13 H 1.48500 * 109.47021 * 30.00460 * 11 9 7 14 14 H 1.48494 * 109.47283 * 150.00414 * 11 9 7 15 15 C 1.46933 * 118.73606 * 53.86045 * 6 5 4 16 16 H 1.09004 * 109.58429 * 65.92882 * 15 6 5 17 17 C 1.50695 * 109.58439 * 186.34927 * 15 6 5 18 18 O 1.20829 * 119.99933 * 37.87199 * 17 15 6 19 19 O 1.34233 * 120.00050 * 217.86493 * 17 15 6 20 20 C 1.53042 * 109.45553 * 240.04290 * 2 1 3 21 21 H 1.09003 * 109.46962 * 300.02818 * 1 2 3 22 22 H 1.09005 * 109.47258 * 60.02071 * 1 2 3 23 23 H 1.08995 * 109.47803 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.49822 * 61.42966 * 4 2 1 25 25 H 1.09001 * 109.49112 * 301.33285 * 4 2 1 26 26 H 1.09001 * 109.58327 * 185.57232 * 5 4 2 27 27 H 1.09000 * 109.70016 * 65.22165 * 5 4 2 28 28 H 0.97010 * 120.00288 * 179.97438 * 10 9 7 29 29 H 0.96700 * 117.00059 * 179.97438 * 19 17 15 30 30 H 1.09000 * 109.50309 * 298.56579 * 20 2 1 31 31 H 1.09000 * 109.50022 * 58.63390 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 1.2499 5 6 3.5714 -0.6889 1.2640 6 7 4.0678 -1.2490 -0.0003 7 6 4.9763 -2.2736 -0.0005 8 1 5.7243 -2.3319 -0.7773 9 6 4.9358 -3.2372 0.9978 10 7 3.8687 -3.3509 1.7598 11 14 6.3956 -4.3729 1.2595 12 1 6.2331 -5.5890 0.4230 13 1 7.6452 -3.6698 0.8729 14 1 6.4693 -4.7626 2.6904 15 6 3.5755 -0.6848 -1.2645 16 1 3.9188 0.3450 -1.3632 17 6 4.0913 -1.5051 -2.4186 18 8 4.1726 -2.7064 -2.3173 19 8 4.4603 -0.9013 -3.5592 20 6 2.0397 -0.7206 -1.2502 21 1 -0.3633 0.5143 0.8898 22 1 -0.3634 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6977 -1.7559 1.2379 25 1 1.6572 -0.2211 2.1397 26 1 3.9416 -1.2850 2.0981 27 1 3.9164 0.3397 1.3685 28 1 3.8403 -4.0246 2.4573 29 1 4.7851 -1.4691 -4.2714 30 1 1.6977 -1.7555 -1.2387 31 1 1.6566 -0.2207 -2.1399 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229294769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:35 Heat of formation + Delta-G solvation = -77.463227 kcal Electronic energy + Delta-G solvation = -15223.015186 eV Core-core repulsion = 12697.791446 eV Total energy + Delta-G solvation = -2525.223740 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59194 -37.40591 -35.24754 -33.64921 -31.32408 -29.96381 -27.42729 -24.35084 -23.53806 -21.63262 -20.04726 -18.96897 -17.23895 -16.87797 -15.46933 -15.00434 -14.38248 -13.97250 -13.69190 -13.25592 -13.09007 -12.70412 -12.28600 -11.90397 -11.31584 -11.28173 -11.07336 -10.72105 -10.65393 -10.50310 -10.34323 -10.07227 -10.06751 -9.72174 -9.32469 -9.19384 -8.33933 -6.56928 -5.74432 -3.23608 3.11844 3.42920 3.48857 3.50941 3.79798 4.54220 5.37290 5.41205 5.47013 5.55187 5.65111 6.01542 6.03956 6.12432 6.22120 6.29151 6.36665 6.49471 6.57943 6.76551 6.82403 6.93856 6.98691 7.24055 7.53505 7.64662 7.85576 8.47181 8.82113 9.20714 9.78811 10.35636 11.32180 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.014593 C = 0.010350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.047701 B = 1918.300444 C = 2704.559446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.060 0.940 4 C -0.123 4.123 5 C 0.168 3.832 6 N -0.578 5.578 7 C -0.237 4.237 8 H 0.062 0.938 9 C 0.011 3.989 10 N -0.894 5.894 11 Si 0.904 3.096 12 H -0.287 1.287 13 H -0.280 1.280 14 H -0.290 1.290 15 C 0.180 3.820 16 H 0.057 0.943 17 C 0.466 3.534 18 O -0.473 6.473 19 O -0.535 6.535 20 C -0.117 4.117 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.004 0.996 28 H 0.253 0.747 29 H 0.394 0.606 30 H 0.068 0.932 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 6.681 -4.460 8.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.162 4.162 5 C 0.043 3.957 6 N -0.304 5.304 7 C -0.366 4.366 8 H 0.080 0.920 9 C -0.188 4.188 10 N -0.538 5.538 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.206 1.206 14 H -0.216 1.216 15 C 0.073 3.927 16 H 0.075 0.925 17 C 0.306 3.694 18 O -0.355 6.355 19 O -0.347 6.347 20 C -0.157 4.157 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.021 0.979 28 H 0.063 0.937 29 H 0.251 0.749 30 H 0.087 0.913 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.585 6.449 -3.965 8.376 hybrid contribution 0.800 -1.188 -0.411 1.490 sum -2.785 5.261 -4.376 7.388 Atomic orbital electron populations 1.21823 0.96241 1.01416 1.00514 1.21027 0.94370 0.98825 0.96078 0.92201 1.21984 0.98901 1.00967 0.94312 1.20902 0.90867 0.94270 0.89639 1.44211 1.48828 1.39522 0.97792 1.19007 1.04895 1.01636 1.11085 0.92035 1.25095 0.96831 0.96406 1.00473 1.69969 1.26358 1.34972 1.22529 0.86285 0.82498 0.81063 0.76824 1.21357 1.20558 1.21606 1.20400 0.92773 0.94990 0.84531 0.92505 1.23769 0.74986 0.88102 0.82570 1.90732 1.48487 1.16218 1.80106 1.84595 1.77956 1.46463 1.25687 1.22058 0.94979 1.01452 0.97182 0.93161 0.93588 0.92916 0.90509 0.93869 0.88420 0.97856 0.93739 0.74871 0.91286 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 37.16 0.34 -1.77 16 2 C -0.08 -1.49 2.68 -90.58 -0.24 -1.73 16 3 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.12 -2.52 5.36 -26.61 -0.14 -2.66 16 5 C 0.17 3.91 5.66 -3.71 -0.02 3.89 16 6 N -0.58 -14.57 2.95 -165.83 -0.49 -15.06 16 7 C -0.24 -6.66 7.36 -15.06 -0.11 -6.77 16 8 H 0.06 1.79 6.63 -52.49 -0.35 1.44 16 9 C 0.01 0.32 4.97 -17.43 -0.09 0.23 16 10 N -0.89 -25.74 11.22 55.49 0.62 -25.12 16 11 Si 0.90 22.58 29.58 -169.99 -5.03 17.55 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.18 3.90 3.39 -68.52 -0.23 3.66 16 16 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 17 C 0.47 10.09 6.58 36.00 0.24 10.33 16 18 O -0.47 -12.05 15.08 -18.75 -0.28 -12.34 16 19 O -0.53 -9.08 13.42 -39.26 -0.53 -9.61 16 20 C -0.12 -2.25 4.66 -26.39 -0.12 -2.37 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 1.83 8.12 -51.93 -0.42 1.40 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 2.56 5.76 -51.93 -0.30 2.26 16 27 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 4.85 9.10 45.56 0.41 5.27 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 254.64 15.07 3.84 3.84 Total: -1.00 -31.49 254.64 -5.84 -37.33 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.59 Total: 0.61 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.38 Total: 2.80 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.13 Total: -40.18 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.81 Total: -21.94 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.49 -5.84 -37.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229294769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.135 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds