Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99626 * 2 1 4 4 C 1.52994 * 109.50068 * 60.00531 * 3 2 1 5 5 C 1.53112 * 109.53858 * 299.90111 * 3 2 1 6 6 C 1.53122 * 109.16511 * 297.69583 * 5 3 2 7 7 C 1.53039 * 109.27523 * 302.34497 * 6 5 3 8 8 N 1.46844 * 109.52305 * 59.17674 * 7 6 5 9 9 C 1.46906 * 111.00231 * 174.15782 * 8 7 6 10 10 C 1.50701 * 109.46665 * 59.32108 * 9 8 7 11 11 H 1.08003 * 120.00349 * 5.00411 * 10 9 8 12 12 C 1.37875 * 119.99665 * 185.00796 * 10 9 8 13 13 N 1.31513 * 120.00235 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99806 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47087 * 59.99993 * 14 12 10 16 16 H 1.48499 * 109.47195 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47281 * 300.00046 * 14 12 10 18 18 C 1.46847 * 111.20150 * 298.25606 * 8 7 6 19 19 H 1.08995 * 109.47003 * 299.99612 * 1 2 3 20 20 H 1.09006 * 109.47249 * 60.00299 * 1 2 3 21 21 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47019 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47581 * 60.07581 * 4 3 2 24 24 H 1.09001 * 109.47111 * 300.07207 * 4 3 2 25 25 H 1.09001 * 109.52118 * 57.60446 * 5 3 2 26 26 H 1.09003 * 109.52377 * 177.78902 * 5 3 2 27 27 H 1.08991 * 109.50340 * 182.40431 * 6 5 3 28 28 H 1.08994 * 109.53309 * 62.30371 * 6 5 3 29 29 H 1.08997 * 109.46284 * 299.16209 * 7 6 5 30 30 H 1.08995 * 109.45926 * 179.19502 * 7 6 5 31 31 H 1.08999 * 109.47535 * 179.32064 * 9 8 7 32 32 H 1.08995 * 109.46799 * 299.32457 * 9 8 7 33 33 H 0.96999 * 120.00066 * 180.02562 * 13 12 10 34 34 H 1.08992 * 109.46274 * 301.72602 * 18 8 7 35 35 H 1.09002 * 109.46065 * 181.75510 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5592 2.0653 1.2490 5 6 1.5612 2.0659 -1.2509 6 6 2.0681 1.3308 -2.4949 7 6 3.5921 1.2102 -2.4245 8 7 3.9706 0.4748 -1.2112 9 6 5.4169 0.2191 -1.1802 10 6 6.1596 1.5299 -1.2187 11 1 5.6139 2.4611 -1.1802 12 6 7.5357 1.5402 -1.3030 13 7 8.2002 0.4063 -1.3504 14 14 8.4563 3.1650 -1.3515 15 1 8.1668 3.9350 -0.1152 16 1 9.9155 2.9047 -1.4417 17 1 8.0183 3.9469 -2.5355 18 6 3.5359 1.1856 -0.0020 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 2.0024 3.0611 1.2483 23 1 1.8821 1.5254 2.1392 24 1 0.4725 2.1505 1.2499 25 1 0.4727 2.1160 -1.2756 26 1 1.9729 3.0750 -1.2311 27 1 1.7881 1.8902 -3.3874 28 1 1.6257 0.3355 -2.5355 29 1 4.0344 2.2060 -2.3984 30 1 3.9548 0.6747 -3.3018 31 1 5.6718 -0.3162 -0.2655 32 1 5.6980 -0.3832 -2.0440 33 1 9.1684 0.4136 -1.4094 34 1 3.9785 2.1815 0.0127 35 1 3.8578 0.6321 0.8801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230265357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = -50.088498 kcal Electronic energy + Delta-G solvation = -15303.535768 eV Core-core repulsion = 12915.332180 eV Total energy + Delta-G solvation = -2388.203588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41495 -36.29172 -33.19032 -31.71832 -31.17720 -27.34730 -26.35503 -25.85218 -23.78809 -21.75896 -20.34192 -19.07435 -16.45359 -15.85743 -15.16743 -14.98310 -14.68960 -14.32026 -13.61426 -13.32313 -12.97415 -12.51960 -12.44013 -11.87902 -11.70602 -11.68037 -11.46512 -11.01247 -10.98610 -10.85006 -10.34461 -10.24807 -10.07624 -10.04862 -9.72375 -9.30188 -9.05005 -8.39986 -7.03582 -5.98539 -4.08858 3.29157 3.34444 3.36208 4.17713 4.42026 4.98060 5.04511 5.20656 5.30676 5.45523 5.50325 5.53297 5.61374 5.73282 5.81322 5.87119 6.04714 6.12229 6.22436 6.28327 6.36489 6.41896 6.52261 6.69556 6.79739 6.94697 7.36251 7.57387 7.69457 7.94429 8.15031 8.35171 8.42612 9.02425 9.57739 11.05516 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045621 B = 0.008331 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.607868 B = 3359.961615 C = 3412.084065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.355 6.355 3 C 0.115 3.885 4 C -0.176 4.176 5 C -0.142 4.142 6 C -0.113 4.113 7 C 0.065 3.935 8 N -0.532 5.532 9 C 0.187 3.813 10 C -0.550 4.550 11 H 0.055 0.945 12 C 0.065 3.935 13 N -0.890 5.890 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.082 3.918 19 H 0.035 0.965 20 H 0.038 0.962 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 3.039 1.697 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.273 6.273 3 C 0.076 3.924 4 C -0.234 4.234 5 C -0.180 4.180 6 C -0.151 4.151 7 C -0.063 4.063 8 N -0.255 5.255 9 C 0.062 3.938 10 C -0.589 4.589 11 H 0.073 0.927 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.047 4.047 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.486 2.323 1.668 13.786 hybrid contribution 0.849 1.999 0.003 2.171 sum -12.637 4.322 1.672 13.460 Atomic orbital electron populations 1.22719 0.83495 1.01831 0.99327 1.88145 1.17538 1.26961 1.94659 1.21678 0.94957 0.83047 0.92750 1.22380 1.01028 1.01099 0.98908 1.22145 0.99977 0.99556 0.96277 1.21552 0.97365 1.00370 0.95836 1.21833 0.92810 0.97461 0.94224 1.62356 1.18417 1.44700 1.00022 1.19751 0.80427 0.95697 0.97964 1.21743 0.92062 0.93630 1.51501 0.92680 1.24963 0.97718 0.96086 0.94988 1.69936 1.07674 1.25361 1.49919 0.86728 0.78854 0.84301 0.78546 1.20319 1.21173 1.20313 1.21822 0.89520 0.98211 0.95183 0.94673 0.94397 0.90408 0.91685 0.91758 0.92632 0.92437 0.91602 0.92761 0.91361 0.94666 0.91735 0.95440 0.94703 0.92767 0.93312 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.22 101.05 1.03 1.33 16 2 O -0.35 -6.11 9.68 -35.23 -0.34 -6.45 16 3 C 0.12 1.91 0.73 -90.54 -0.07 1.84 16 4 C -0.18 -2.39 8.26 37.15 0.31 -2.08 16 5 C -0.14 -2.15 4.49 -26.61 -0.12 -2.27 16 6 C -0.11 -1.87 5.94 -26.65 -0.16 -2.03 16 7 C 0.07 1.34 5.03 -3.83 -0.02 1.32 16 8 N -0.53 -12.02 4.74 -236.11 -1.12 -13.14 16 9 C 0.19 4.98 5.12 -4.97 -0.03 4.95 16 10 C -0.55 -15.29 7.72 -34.44 -0.27 -15.56 16 11 H 0.06 1.51 5.86 -52.48 -0.31 1.20 16 12 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.08 1.66 4.09 -3.83 -0.02 1.64 16 19 H 0.03 0.39 6.42 -51.93 -0.33 0.06 16 20 H 0.04 0.45 6.37 -51.93 -0.33 0.12 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 25 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.16 7.80 -51.93 -0.41 0.76 16 29 H 0.04 0.77 6.73 -51.93 -0.35 0.42 16 30 H 0.06 1.35 8.12 -51.93 -0.42 0.93 16 31 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.03 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.05 1.04 6.86 -51.93 -0.36 0.68 16 35 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 LS Contribution 270.08 15.07 4.07 4.07 Total: -1.00 -29.87 270.08 -6.79 -36.66 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.69 Total: -2.77 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 0.57 Total: -9.11 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.38 Total: -38.91 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.34 Total: -6.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.87 -6.79 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230265357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.432 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds