Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99626 * 2 1 4 4 C 1.52994 * 109.50068 * 60.00531 * 3 2 1 5 5 C 1.53112 * 109.53858 * 299.90111 * 3 2 1 6 6 C 1.53122 * 109.16511 * 297.69583 * 5 3 2 7 7 C 1.53039 * 109.27523 * 302.34497 * 6 5 3 8 8 N 1.46844 * 109.52305 * 59.17674 * 7 6 5 9 9 C 1.46906 * 111.00231 * 174.15782 * 8 7 6 10 10 C 1.50701 * 109.46665 * 59.32108 * 9 8 7 11 11 H 1.08003 * 120.00349 * 5.00411 * 10 9 8 12 12 C 1.37875 * 119.99665 * 185.00796 * 10 9 8 13 13 N 1.31513 * 120.00235 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99806 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47087 * 59.99993 * 14 12 10 16 16 H 1.48499 * 109.47195 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47281 * 300.00046 * 14 12 10 18 18 C 1.46847 * 111.20150 * 298.25606 * 8 7 6 19 19 H 1.08995 * 109.47003 * 299.99612 * 1 2 3 20 20 H 1.09006 * 109.47249 * 60.00299 * 1 2 3 21 21 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47019 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47581 * 60.07581 * 4 3 2 24 24 H 1.09001 * 109.47111 * 300.07207 * 4 3 2 25 25 H 1.09001 * 109.52118 * 57.60446 * 5 3 2 26 26 H 1.09003 * 109.52377 * 177.78902 * 5 3 2 27 27 H 1.08991 * 109.50340 * 182.40431 * 6 5 3 28 28 H 1.08994 * 109.53309 * 62.30371 * 6 5 3 29 29 H 1.08997 * 109.46284 * 299.16209 * 7 6 5 30 30 H 1.08995 * 109.45926 * 179.19502 * 7 6 5 31 31 H 1.08999 * 109.47535 * 179.32064 * 9 8 7 32 32 H 1.08995 * 109.46799 * 299.32457 * 9 8 7 33 33 H 0.96999 * 120.00066 * 180.02562 * 13 12 10 34 34 H 1.08992 * 109.46274 * 301.72602 * 18 8 7 35 35 H 1.09002 * 109.46065 * 181.75510 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5592 2.0653 1.2490 5 6 1.5612 2.0659 -1.2509 6 6 2.0681 1.3308 -2.4949 7 6 3.5921 1.2102 -2.4245 8 7 3.9706 0.4748 -1.2112 9 6 5.4169 0.2191 -1.1802 10 6 6.1596 1.5299 -1.2187 11 1 5.6139 2.4611 -1.1802 12 6 7.5357 1.5402 -1.3030 13 7 8.2002 0.4063 -1.3504 14 14 8.4563 3.1650 -1.3515 15 1 8.1668 3.9350 -0.1152 16 1 9.9155 2.9047 -1.4417 17 1 8.0183 3.9469 -2.5355 18 6 3.5359 1.1856 -0.0020 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 2.0024 3.0611 1.2483 23 1 1.8821 1.5254 2.1392 24 1 0.4725 2.1505 1.2499 25 1 0.4727 2.1160 -1.2756 26 1 1.9729 3.0750 -1.2311 27 1 1.7881 1.8902 -3.3874 28 1 1.6257 0.3355 -2.5355 29 1 4.0344 2.2060 -2.3984 30 1 3.9548 0.6747 -3.3018 31 1 5.6718 -0.3162 -0.2655 32 1 5.6980 -0.3832 -2.0440 33 1 9.1684 0.4136 -1.4094 34 1 3.9785 2.1815 0.0127 35 1 3.8578 0.6321 0.8801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230265357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = -70.901376 kcal Electronic energy + Delta-G solvation = -15304.438282 eV Core-core repulsion = 12915.332180 eV Total energy + Delta-G solvation = -2389.106102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79558 -37.86700 -35.05948 -33.45407 -32.54403 -29.02286 -27.84036 -27.11752 -25.64458 -23.36685 -21.97259 -20.49956 -18.54163 -17.28227 -16.76055 -16.28352 -16.12714 -15.97345 -15.20832 -15.00316 -14.34054 -14.15114 -13.73808 -13.41449 -13.33173 -12.92278 -12.89188 -12.84276 -12.71699 -12.26980 -12.15159 -11.93638 -11.84168 -11.62978 -11.47333 -10.83550 -10.61705 -10.22984 -8.95053 -8.14006 -6.36685 1.36045 1.38161 1.46381 2.36487 2.98799 3.08398 3.38880 3.81435 3.92919 4.11951 4.25518 4.42943 4.57946 4.59372 4.68617 4.72324 4.80393 4.86078 4.90179 4.93129 4.99063 5.04678 5.09827 5.24092 5.28772 5.30429 5.37830 5.46861 5.73127 6.04708 6.28387 6.48644 6.67688 6.85272 7.35200 8.86933 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045621 B = 0.008331 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.607868 B = 3359.961615 C = 3412.084065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.388 6.388 3 C 0.118 3.882 4 C -0.171 4.171 5 C -0.139 4.139 6 C -0.104 4.104 7 C 0.065 3.935 8 N -0.537 5.537 9 C 0.200 3.800 10 C -0.558 4.558 11 H 0.058 0.942 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.961 3.039 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.081 3.919 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.049 0.951 31 H -0.003 1.003 32 H 0.004 0.996 33 H 0.266 0.734 34 H 0.036 0.964 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 4.968 1.733 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.307 6.307 3 C 0.078 3.922 4 C -0.228 4.228 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.064 4.064 8 N -0.260 5.260 9 C 0.074 3.926 10 C -0.597 4.597 11 H 0.077 0.923 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.785 3.215 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.048 4.048 19 H 0.072 0.928 20 H 0.069 0.931 21 H 0.106 0.894 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.441 4.257 1.707 16.108 hybrid contribution 1.410 1.309 -0.006 1.924 sum -14.031 5.566 1.701 15.190 Atomic orbital electron populations 1.22944 0.80958 1.03145 1.00774 1.88088 1.20318 1.27326 1.95010 1.21561 0.91813 0.83669 0.95116 1.22326 1.02784 1.00742 0.96974 1.22152 1.01972 0.99088 0.94398 1.21486 0.93595 1.01009 0.98087 1.21893 0.96087 0.95837 0.92546 1.62289 1.15476 1.46241 1.02022 1.19394 0.83437 0.94869 0.94947 1.21951 0.92556 0.93913 1.51286 0.92344 1.25885 0.98723 0.99958 0.94417 1.70075 1.08080 1.27829 1.50746 0.85575 0.77378 0.79519 0.79031 1.19327 1.20637 1.19326 1.21846 0.93149 0.96576 0.93182 0.92831 0.93113 0.89398 0.91018 0.92285 0.89862 0.89110 0.91122 0.89970 0.91752 0.96124 0.93207 0.98440 0.97797 0.92553 0.94552 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.22 113.37 1.16 1.55 16 2 O -0.39 -12.70 9.68 -148.98 -1.44 -14.15 16 3 C 0.12 3.68 0.73 -10.74 -0.01 3.68 16 4 C -0.17 -4.15 8.26 71.98 0.59 -3.56 16 5 C -0.14 -3.75 4.49 30.67 0.14 -3.61 16 6 C -0.10 -3.21 5.94 30.65 0.18 -3.03 16 7 C 0.06 2.66 5.03 86.33 0.43 3.10 16 8 N -0.54 -25.03 4.74 -900.93 -4.27 -29.31 16 9 C 0.20 11.23 5.12 85.56 0.44 11.67 16 10 C -0.56 -31.86 7.72 25.60 0.20 -31.66 16 11 H 0.06 3.24 5.86 -2.91 -0.02 3.22 16 12 C 0.01 0.55 5.46 84.65 0.46 1.01 16 13 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 14 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C 0.08 3.34 4.09 86.33 0.35 3.70 16 19 H 0.05 0.98 6.42 -2.39 -0.02 0.97 16 20 H 0.05 0.99 6.37 -2.38 -0.02 0.97 16 21 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.08 1.58 6.54 -2.39 -0.02 1.56 16 25 H 0.09 1.91 6.43 -2.39 -0.02 1.90 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.06 7.80 -2.39 -0.02 2.04 16 29 H 0.02 0.90 6.73 -2.39 -0.02 0.88 16 30 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 31 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 32 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.04 1.57 6.86 -2.39 -0.02 1.55 16 35 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16 Total: -1.00 -66.01 270.08 1.59 -64.41 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.05 Total: 6.24 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 3.95 Total: -17.16 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.99 Total: -85.74 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.44 Total: -14.15 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -66.01 1.59 -64.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230265357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.488 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds