Wall clock time and date at job start Sun Mar 29 2020 22:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42903 * 109.57179 * 2 1 4 4 C 1.54523 * 109.57351 * 239.75575 * 2 1 3 5 5 C 1.45883 * 111.67183 * 162.83063 * 4 2 1 6 6 C 1.53977 * 112.66784 * 61.49804 * 5 4 2 7 7 N 1.44307 * 108.31042 * 278.59201 * 6 5 4 8 8 C 1.46903 * 110.99783 * 221.34541 * 7 6 5 9 9 C 1.50701 * 109.47212 * 66.05025 * 8 7 6 10 10 H 1.08007 * 119.99529 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00480 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99847 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00317 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47407 * 59.99973 * 13 11 9 15 15 H 1.48498 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47184 * 299.99875 * 13 11 9 17 17 C 1.47948 * 113.64238 * 95.40062 * 7 6 5 18 18 C 1.50533 * 109.67766 * 120.31446 * 2 1 3 19 19 H 1.09007 * 109.47171 * 59.99746 * 1 2 3 20 20 H 1.08999 * 109.47256 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47346 * 299.99879 * 1 2 3 22 22 H 0.96700 * 114.00311 * 299.75520 * 3 2 1 23 23 H 1.08997 * 109.04144 * 283.39299 * 4 2 1 24 24 H 1.09003 * 109.04111 * 42.27132 * 4 2 1 25 25 H 1.09000 * 108.84083 * 182.31693 * 5 4 2 26 26 H 1.08997 * 108.84466 * 300.67150 * 5 4 2 27 27 H 1.08994 * 109.69984 * 38.29959 * 6 5 4 28 28 H 1.09003 * 109.69648 * 158.89194 * 6 5 4 29 29 H 1.09009 * 109.46818 * 186.04777 * 8 7 6 30 30 H 1.08997 * 109.47637 * 306.04693 * 8 7 6 31 31 H 0.96991 * 120.00070 * 179.97438 * 12 11 9 32 32 H 1.08996 * 108.70778 * 79.13076 * 17 7 6 33 33 H 1.09000 * 108.70770 * 197.27011 * 17 7 6 34 34 H 1.08996 * 108.78931 * 332.52005 * 18 2 1 35 35 H 1.08999 * 108.79054 * 90.73326 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0086 1.3465 0.0000 4 6 2.0476 -0.7333 -1.2578 5 6 3.4485 -0.4247 -1.5230 6 6 4.3800 -0.8643 -0.3784 7 7 4.3383 0.1443 0.6528 8 6 5.6795 0.3974 1.1961 9 6 6.5463 1.0127 0.1278 10 1 6.1414 1.1968 -0.8564 11 6 7.8561 1.3405 0.4068 12 7 8.3492 1.1159 1.6051 13 14 8.9302 2.1038 -0.9172 14 1 8.3277 3.3847 -1.3661 15 1 10.2860 2.3596 -0.3681 16 1 9.0311 1.1733 -2.0701 17 6 3.3753 -0.1539 1.7357 18 6 2.0368 -0.7154 1.2236 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.7273 1.8640 -0.7669 23 1 1.9419 -1.8083 -1.1114 24 1 1.4483 -0.4320 -2.1170 25 1 3.7532 -0.9309 -2.4389 26 1 3.5509 0.6509 -1.6669 27 1 4.0402 -1.8177 0.0262 28 1 5.3989 -0.9655 -0.7522 29 1 5.6057 1.0807 2.0423 30 1 6.1215 -0.5428 1.5258 31 1 9.2707 1.3462 1.8013 32 1 3.8239 -0.8814 2.4120 33 1 3.1782 0.7634 2.2906 34 1 1.2930 -0.6268 2.0154 35 1 2.1675 -1.7708 0.9844 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230352679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:40 Heat of formation + Delta-G solvation = -51.233491 kcal Electronic energy + Delta-G solvation = -15328.543763 eV Core-core repulsion = 12940.290525 eV Total energy + Delta-G solvation = -2388.253239 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.27633 -35.88666 -33.07276 -32.21052 -31.81224 -28.78305 -26.41914 -25.02421 -23.03656 -21.62095 -19.79032 -18.89778 -16.30168 -15.96822 -15.39688 -15.12837 -14.38409 -14.06045 -13.42609 -13.14299 -12.88880 -12.69409 -12.21663 -11.99147 -11.84957 -11.58984 -11.29465 -10.88634 -10.61300 -10.46742 -10.31528 -10.20930 -10.15302 -9.87058 -9.57089 -9.27680 -9.06412 -8.33419 -6.81244 -5.92393 -3.92775 3.38965 3.42597 3.45934 4.50180 4.62104 4.91867 5.04141 5.10448 5.31360 5.42120 5.51341 5.59617 5.77106 5.81440 5.92087 5.97862 6.07631 6.15248 6.25235 6.43595 6.49381 6.53108 6.55036 6.80282 6.90939 7.05218 7.48078 7.53304 7.96127 8.22475 8.30799 8.55019 8.77538 9.16566 9.70755 11.18297 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048532 B = 0.008373 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.796531 B = 3343.334457 C = 3558.393911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.140 3.860 3 O -0.522 6.522 4 C -0.134 4.134 5 C -0.113 4.113 6 C 0.074 3.926 7 N -0.528 5.528 8 C 0.197 3.803 9 C -0.499 4.499 10 H 0.063 0.937 11 C 0.052 3.948 12 N -0.902 5.902 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.080 3.920 18 C -0.107 4.107 19 H 0.053 0.947 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.360 0.640 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.015 0.985 28 H 0.077 0.923 29 H 0.026 0.974 30 H -0.015 1.015 31 H 0.260 0.740 32 H 0.013 0.987 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 -3.744 -4.107 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.098 3.902 3 O -0.325 6.325 4 C -0.172 4.172 5 C -0.152 4.152 6 C -0.055 4.055 7 N -0.253 5.253 8 C 0.072 3.928 9 C -0.538 4.538 10 H 0.081 0.919 11 C -0.148 4.148 12 N -0.542 5.542 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.048 4.048 18 C -0.144 4.144 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.204 0.796 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.003 0.997 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.395 -3.524 -3.633 14.319 hybrid contribution 0.593 -0.235 -0.780 1.007 sum -12.802 -3.759 -4.413 14.053 Atomic orbital electron populations 1.22570 0.96898 1.01903 1.01974 1.20794 0.90547 0.84043 0.94797 1.86893 1.76540 1.21668 1.47357 1.21242 0.98211 1.00116 0.97592 1.20423 0.93777 1.03161 0.97795 1.21602 0.99554 0.91497 0.92837 1.60686 1.09581 1.43337 1.11684 1.19705 0.82566 0.94933 0.95609 1.21166 0.94948 1.39552 0.98105 0.91912 1.24994 0.98031 0.96249 0.95531 1.69959 1.15218 1.48809 1.20213 0.86585 0.79329 0.79818 0.81784 1.20235 1.21483 1.20412 1.21978 0.90959 0.98535 0.93291 1.21432 0.97849 0.98671 0.96487 0.92742 0.92256 0.92120 0.79564 0.92590 0.93012 0.93645 0.90474 0.96685 0.90464 0.95588 0.99727 0.93035 0.96850 0.91794 0.91982 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.54 37.15 0.32 -1.63 16 2 C 0.14 1.97 0.98 -91.06 -0.09 1.88 16 3 O -0.52 -8.52 10.04 -35.23 -0.35 -8.87 16 4 C -0.13 -1.85 4.58 -29.30 -0.13 -1.99 16 5 C -0.11 -1.91 5.19 -29.59 -0.15 -2.07 16 6 C 0.07 1.51 5.00 -4.70 -0.02 1.49 16 7 N -0.53 -11.88 3.31 -236.07 -0.78 -12.67 16 8 C 0.20 5.36 4.58 -4.97 -0.02 5.34 16 9 C -0.50 -14.40 8.12 -34.44 -0.28 -14.68 16 10 H 0.06 1.79 7.61 -52.48 -0.40 1.39 16 11 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 13 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.08 1.57 4.79 -2.77 -0.01 1.56 16 18 C -0.11 -1.64 4.77 -27.48 -0.13 -1.77 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 22 H 0.36 4.62 9.06 45.56 0.41 5.03 16 23 H 0.06 0.74 7.59 -51.93 -0.39 0.34 16 24 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.43 7.30 -51.93 -0.38 1.05 16 27 H 0.01 0.29 6.79 -51.93 -0.35 -0.07 16 28 H 0.08 1.75 6.73 -51.93 -0.35 1.40 16 29 H 0.03 0.76 8.04 -51.92 -0.42 0.35 16 30 H -0.02 -0.44 8.12 -51.93 -0.42 -0.86 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.01 0.27 8.02 -51.93 -0.42 -0.15 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 0.85 7.70 -51.93 -0.40 0.45 16 35 H 0.06 0.90 6.66 -51.93 -0.35 0.55 16 LS Contribution 270.12 15.07 4.07 4.07 Total: -1.00 -31.25 270.12 -7.10 -38.35 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.13 Total: -0.77 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.63 Total: -10.43 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.05 Total: -39.48 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.35 Total: -8.87 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.25 -7.10 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.880 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds