Wall clock time and date at job start Sun Mar 29 2020 22:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42903 * 109.57179 * 2 1 4 4 C 1.54523 * 109.57351 * 239.75575 * 2 1 3 5 5 C 1.45883 * 111.67183 * 162.83063 * 4 2 1 6 6 C 1.53977 * 112.66784 * 61.49804 * 5 4 2 7 7 N 1.44307 * 108.31042 * 278.59201 * 6 5 4 8 8 C 1.46903 * 110.99783 * 221.34541 * 7 6 5 9 9 C 1.50701 * 109.47212 * 66.05025 * 8 7 6 10 10 H 1.08007 * 119.99529 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00480 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99847 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00317 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47407 * 59.99973 * 13 11 9 15 15 H 1.48498 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47184 * 299.99875 * 13 11 9 17 17 C 1.47948 * 113.64238 * 95.40062 * 7 6 5 18 18 C 1.50533 * 109.67766 * 120.31446 * 2 1 3 19 19 H 1.09007 * 109.47171 * 59.99746 * 1 2 3 20 20 H 1.08999 * 109.47256 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47346 * 299.99879 * 1 2 3 22 22 H 0.96700 * 114.00311 * 299.75520 * 3 2 1 23 23 H 1.08997 * 109.04144 * 283.39299 * 4 2 1 24 24 H 1.09003 * 109.04111 * 42.27132 * 4 2 1 25 25 H 1.09000 * 108.84083 * 182.31693 * 5 4 2 26 26 H 1.08997 * 108.84466 * 300.67150 * 5 4 2 27 27 H 1.08994 * 109.69984 * 38.29959 * 6 5 4 28 28 H 1.09003 * 109.69648 * 158.89194 * 6 5 4 29 29 H 1.09009 * 109.46818 * 186.04777 * 8 7 6 30 30 H 1.08997 * 109.47637 * 306.04693 * 8 7 6 31 31 H 0.96991 * 120.00070 * 179.97438 * 12 11 9 32 32 H 1.08996 * 108.70778 * 79.13076 * 17 7 6 33 33 H 1.09000 * 108.70770 * 197.27011 * 17 7 6 34 34 H 1.08996 * 108.78931 * 332.52005 * 18 2 1 35 35 H 1.08999 * 108.79054 * 90.73326 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0086 1.3465 0.0000 4 6 2.0476 -0.7333 -1.2578 5 6 3.4485 -0.4247 -1.5230 6 6 4.3800 -0.8643 -0.3784 7 7 4.3383 0.1443 0.6528 8 6 5.6795 0.3974 1.1961 9 6 6.5463 1.0127 0.1278 10 1 6.1414 1.1968 -0.8564 11 6 7.8561 1.3405 0.4068 12 7 8.3492 1.1159 1.6051 13 14 8.9302 2.1038 -0.9172 14 1 8.3277 3.3847 -1.3661 15 1 10.2860 2.3596 -0.3681 16 1 9.0311 1.1733 -2.0701 17 6 3.3753 -0.1539 1.7357 18 6 2.0368 -0.7154 1.2236 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.7273 1.8640 -0.7669 23 1 1.9419 -1.8083 -1.1114 24 1 1.4483 -0.4320 -2.1170 25 1 3.7532 -0.9309 -2.4389 26 1 3.5509 0.6509 -1.6669 27 1 4.0402 -1.8177 0.0262 28 1 5.3989 -0.9655 -0.7522 29 1 5.6057 1.0807 2.0423 30 1 6.1215 -0.5428 1.5258 31 1 9.2707 1.3462 1.8013 32 1 3.8239 -0.8814 2.4120 33 1 3.1782 0.7634 2.2906 34 1 1.2930 -0.6268 2.0154 35 1 2.1675 -1.7708 0.9844 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230352679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:39 Heat of formation + Delta-G solvation = -73.636143 kcal Electronic energy + Delta-G solvation = -15329.515215 eV Core-core repulsion = 12940.290525 eV Total energy + Delta-G solvation = -2389.224690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59193 -37.49062 -34.88953 -33.88860 -33.15029 -30.30664 -28.13969 -26.66673 -24.44238 -23.53002 -21.06979 -20.40297 -18.50011 -17.14389 -16.99937 -16.64142 -16.17753 -15.57163 -14.86337 -14.65043 -14.27828 -14.23395 -13.78916 -13.63635 -13.11184 -12.99137 -12.75418 -12.67945 -12.41560 -12.16304 -11.92819 -11.79410 -11.57270 -11.38129 -11.16831 -11.09458 -10.60005 -10.40260 -8.67180 -8.16977 -6.27783 1.40244 1.44605 1.52386 2.41584 3.13625 3.37693 3.52025 3.93192 3.98499 4.09604 4.25330 4.36498 4.46299 4.60351 4.75020 4.82098 4.85020 4.90321 4.96178 5.11707 5.16648 5.18984 5.25017 5.29331 5.31220 5.48320 5.54738 5.69195 5.71177 6.13363 6.56133 6.84226 6.95868 7.23440 7.41945 8.93370 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048532 B = 0.008373 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.796531 B = 3343.334457 C = 3558.393911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 O -0.552 6.552 4 C -0.132 4.132 5 C -0.102 4.102 6 C 0.072 3.928 7 N -0.529 5.529 8 C 0.212 3.788 9 C -0.515 4.515 10 H 0.063 0.937 11 C -0.003 4.003 12 N -0.939 5.939 13 Si 0.972 3.028 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.266 1.266 17 C 0.078 3.922 18 C -0.103 4.103 19 H 0.070 0.930 20 H 0.075 0.925 21 H 0.057 0.943 22 H 0.373 0.627 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.045 0.955 29 H -0.008 1.008 30 H -0.047 1.047 31 H 0.264 0.736 32 H 0.003 0.997 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.318 -3.993 -6.059 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.094 3.906 3 O -0.358 6.358 4 C -0.169 4.169 5 C -0.140 4.140 6 C -0.057 4.057 7 N -0.253 5.253 8 C 0.085 3.915 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.201 4.201 12 N -0.580 5.580 13 Si 0.796 3.204 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.050 4.050 18 C -0.141 4.141 19 H 0.089 0.911 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.220 0.780 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.010 0.990 30 H -0.029 1.029 31 H 0.072 0.928 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.063 -3.782 -5.601 16.510 hybrid contribution 1.096 -0.182 -0.113 1.117 sum -13.967 -3.964 -5.714 15.602 Atomic orbital electron populations 1.22445 0.93904 1.03212 1.02739 1.20941 0.92707 0.82973 0.94020 1.86851 1.77417 1.22965 1.48529 1.21214 0.96155 1.00966 0.98597 1.20303 0.95134 1.01948 0.96626 1.21672 0.99000 0.91732 0.93328 1.60670 1.07271 1.44831 1.12570 1.19367 0.85225 0.92469 0.94415 1.21427 0.95708 1.39845 0.98307 0.91858 1.25975 0.99531 0.96524 0.98024 1.70102 1.15770 1.49709 1.22450 0.85402 0.77161 0.79094 0.78743 1.19322 1.20830 1.19082 1.22045 0.92688 0.97756 0.92535 1.21474 0.95340 0.99201 0.98084 0.91109 0.90608 0.92345 0.78020 0.91207 0.90139 0.92032 0.92393 0.95398 0.93681 0.98990 1.02929 0.92774 0.97923 0.93485 0.89948 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 8.54 71.98 0.62 -2.38 16 2 C 0.13 3.42 0.98 -11.08 -0.01 3.41 16 3 O -0.55 -17.26 10.04 -148.98 -1.50 -18.76 16 4 C -0.13 -3.17 4.58 28.93 0.13 -3.04 16 5 C -0.10 -3.26 5.19 28.74 0.15 -3.11 16 6 C 0.07 2.91 5.00 87.12 0.44 3.35 16 7 N -0.53 -24.48 3.31 -900.79 -2.99 -27.46 16 8 C 0.21 12.16 4.58 85.56 0.39 12.55 16 9 C -0.51 -30.60 8.12 25.60 0.21 -30.40 16 10 H 0.06 3.68 7.61 -2.91 -0.02 3.65 16 11 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 12 N -0.94 -59.02 13.29 21.45 0.28 -58.73 16 13 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 17 C 0.08 3.10 4.79 86.41 0.41 3.51 16 18 C -0.10 -2.98 4.77 30.11 0.14 -2.84 16 19 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 20 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 22 H 0.37 8.93 9.06 -74.06 -0.67 8.26 16 23 H 0.07 1.53 7.59 -2.39 -0.02 1.52 16 24 H 0.08 1.54 8.02 -2.39 -0.02 1.53 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 2.08 7.30 -2.39 -0.02 2.07 16 27 H 0.03 1.05 6.79 -2.39 -0.02 1.03 16 28 H 0.04 2.10 6.73 -2.39 -0.02 2.08 16 29 H -0.01 -0.51 8.04 -2.38 -0.02 -0.53 16 30 H -0.05 -2.91 8.12 -2.39 -0.02 -2.93 16 31 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.00 0.11 8.02 -2.39 -0.02 0.09 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.04 7.70 -2.39 -0.02 2.03 16 35 H 0.07 1.95 6.66 -2.39 -0.02 1.93 16 Total: -1.00 -69.53 270.12 1.15 -68.38 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.38 Total: 7.46 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 2.94 Total: -18.68 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.70 Total: -86.19 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.50 Total: -18.76 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -69.53 1.15 -68.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.260 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds