Wall clock time and date at job start Sun Mar 29 2020 22:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00294 * 2 1 4 4 C 1.52996 * 112.85026 * 294.68220 * 3 2 1 5 5 C 1.50700 * 109.47028 * 291.10086 * 4 3 2 6 6 O 1.21292 * 120.00364 * 355.51270 * 5 4 3 7 7 N 1.34780 * 119.99927 * 175.50930 * 5 4 3 8 8 C 1.37092 * 119.99955 * 179.72463 * 7 5 4 9 9 H 1.07997 * 120.00243 * 0.28007 * 8 7 5 10 10 C 1.38952 * 120.00251 * 180.27398 * 8 7 5 11 11 N 1.31411 * 119.99535 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00465 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47137 * 59.99607 * 12 10 8 14 14 H 1.48498 * 109.47273 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46682 * 300.00279 * 12 10 8 16 16 C 1.53784 * 113.68550 * 65.95003 * 3 2 1 17 17 C 1.53780 * 87.08095 * 89.13038 * 16 3 2 18 18 C 1.53783 * 113.61283 * 163.48544 * 3 2 1 19 19 H 1.08997 * 109.47279 * 56.02283 * 1 2 3 20 20 H 1.08994 * 109.47565 * 176.03398 * 1 2 3 21 21 H 1.09006 * 109.46512 * 296.03043 * 1 2 3 22 22 H 1.08996 * 109.47313 * 171.10266 * 4 3 2 23 23 H 1.09002 * 109.47037 * 51.10413 * 4 3 2 24 24 H 0.96996 * 119.99621 * 359.97438 * 7 5 4 25 25 H 0.97005 * 120.00046 * 179.97438 * 11 10 8 26 26 H 1.09001 * 113.60963 * 203.67602 * 16 3 2 27 27 H 1.08996 * 113.61475 * 334.57693 * 16 3 2 28 28 H 1.08997 * 113.61122 * 270.88040 * 17 16 3 29 29 H 1.08994 * 113.61941 * 139.98133 * 17 16 3 30 30 H 1.09001 * 113.61537 * 25.34700 * 18 3 2 31 31 H 1.08994 * 113.60972 * 156.25766 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7141 2.0877 -1.2811 5 6 2.4496 1.4577 -2.4357 6 8 3.2060 0.5301 -2.2393 7 7 2.2669 1.9250 -3.6866 8 6 2.9404 1.3556 -4.7362 9 1 3.6138 0.5296 -4.5614 10 6 2.7564 1.8410 -6.0251 11 7 1.9364 2.8457 -6.2380 12 14 3.6734 1.0647 -7.4555 13 1 3.3077 -0.3709 -7.5572 14 1 3.3059 1.7602 -8.7150 15 1 5.1362 1.1881 -7.2310 16 6 1.7373 2.1033 1.2860 17 6 3.0200 1.4743 1.8549 18 6 3.4950 1.3186 0.4005 19 1 -0.3634 0.5743 -0.8522 20 1 -0.3634 -1.0251 -0.0711 21 1 -0.3632 0.4510 0.9235 22 1 2.0428 3.1199 -1.1607 23 1 0.6424 2.0684 -1.4790 24 1 1.6618 2.6666 -3.8437 25 1 1.8082 3.1849 -7.1377 26 1 1.8027 3.1830 1.1521 27 1 0.8312 1.7946 1.8073 28 1 2.8524 0.5249 2.3634 29 1 3.6243 2.1677 2.4397 30 1 4.0078 0.3764 0.2071 31 1 4.0408 2.1839 0.0246 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234583156.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:30 Heat of formation + Delta-G solvation = -86.419914 kcal Electronic energy + Delta-G solvation = -14613.544764 eV Core-core repulsion = 12087.932633 eV Total energy + Delta-G solvation = -2525.612131 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21601 -39.39706 -36.44688 -35.90819 -33.28729 -31.15589 -27.94201 -26.94258 -26.27473 -23.94231 -21.07152 -20.32771 -19.85377 -17.69680 -17.24056 -16.74985 -16.40782 -15.91601 -15.76094 -15.48880 -14.97758 -14.57595 -14.26532 -13.51376 -13.20856 -13.13518 -12.83863 -12.48980 -12.42698 -12.20602 -12.12060 -11.86882 -11.63113 -11.48052 -10.99281 -10.40870 -10.10080 -9.99091 -8.46020 -5.94495 1.38852 1.39703 1.51049 2.09974 2.29690 2.83755 3.18778 3.21821 3.72282 3.78277 3.88958 4.01220 4.38398 4.44958 4.50119 4.57029 4.68282 4.71747 4.85162 4.89602 4.92000 5.08587 5.26432 5.35077 5.40907 5.46855 6.01200 6.46146 6.61623 7.14133 7.58713 8.15953 8.71545 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053482 B = 0.007318 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.416550 B = 3825.161985 C = 3898.766840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.383 6.383 3 C 0.101 3.899 4 C -0.142 4.142 5 C 0.443 3.557 6 O -0.617 6.617 7 N -0.580 5.580 8 C -0.334 4.334 9 H 0.076 0.924 10 C -0.014 4.014 11 N -0.923 5.923 12 Si 0.992 3.008 13 H -0.273 1.273 14 H -0.269 1.269 15 H -0.272 1.272 16 C -0.146 4.146 17 C -0.125 4.125 18 C -0.121 4.121 19 H 0.037 0.963 20 H 0.089 0.911 21 H 0.066 0.934 22 H 0.114 0.886 23 H 0.095 0.905 24 H 0.395 0.605 25 H 0.277 0.723 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 1.960 12.421 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.302 6.302 3 C 0.061 3.939 4 C -0.183 4.183 5 C 0.231 3.769 6 O -0.502 6.502 7 N -0.217 5.217 8 C -0.464 4.464 9 H 0.094 0.906 10 C -0.214 4.214 11 N -0.564 5.564 12 Si 0.815 3.185 13 H -0.199 1.199 14 H -0.193 1.193 15 H -0.197 1.197 16 C -0.183 4.183 17 C -0.162 4.162 18 C -0.158 4.158 19 H 0.055 0.945 20 H 0.108 0.892 21 H 0.085 0.915 22 H 0.132 0.868 23 H 0.113 0.887 24 H 0.228 0.772 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.228 1.273 12.374 12.851 hybrid contribution -0.084 0.077 -1.259 1.264 sum -3.312 1.350 11.115 11.676 Atomic orbital electron populations 1.22908 0.80540 1.03233 1.00851 1.87960 1.20689 1.26812 1.94767 1.22378 0.95827 0.83459 0.92260 1.22074 1.01477 1.01329 0.93381 1.20849 0.85722 0.85848 0.84499 1.90505 1.42208 1.32477 1.85056 1.42002 1.41282 1.32704 1.05744 1.19629 1.23769 1.16033 0.86937 0.90566 1.26022 0.97937 0.96784 1.00609 1.69668 1.36986 1.25975 1.23767 0.85014 0.78384 0.78192 0.76890 1.19875 1.19288 1.19698 1.23531 0.99260 1.00827 0.94696 1.22764 0.97114 1.01372 0.94972 1.22862 0.94468 1.01574 0.96921 0.94483 0.89221 0.91514 0.86769 0.88723 0.77184 0.91339 0.87211 0.89567 0.90311 0.89200 0.93622 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.63 113.37 1.20 1.76 16 2 O -0.38 -14.05 10.29 -147.41 -1.52 -15.57 16 3 C 0.10 3.31 0.39 -10.27 0.00 3.31 16 4 C -0.14 -5.03 5.15 29.85 0.15 -4.88 16 5 C 0.44 21.88 7.58 87.66 0.66 22.54 16 6 O -0.62 -35.29 14.27 -1.50 -0.02 -35.32 16 7 N -0.58 -30.87 5.29 -306.98 -1.62 -32.49 16 8 C -0.33 -19.61 9.68 84.04 0.81 -18.79 16 9 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 10 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 11 N -0.92 -50.93 13.05 21.66 0.28 -50.65 16 12 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 C -0.15 -3.28 7.21 31.12 0.22 -3.05 16 17 C -0.12 -2.99 8.02 31.12 0.25 -2.74 16 18 C -0.12 -4.05 6.07 31.12 0.19 -3.86 16 19 H 0.04 1.03 6.50 -2.39 -0.02 1.01 16 20 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 21 H 0.07 1.38 6.85 -2.38 -0.02 1.36 16 22 H 0.11 3.40 7.99 -2.39 -0.02 3.38 16 23 H 0.09 3.01 6.55 -2.39 -0.02 2.99 16 24 H 0.39 19.94 7.90 -92.71 -0.73 19.20 16 25 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 26 H 0.11 2.01 8.00 -2.39 -0.02 1.99 16 27 H 0.09 1.66 6.81 -2.39 -0.02 1.65 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.83 7.98 -2.39 -0.02 1.81 16 31 H 0.09 2.80 8.10 -2.39 -0.02 2.78 16 Total: -1.00 -70.23 260.56 3.51 -66.72 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.40 Total: 27.27 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 3.96 Total: -6.02 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.34 Total: -83.15 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -1.54 Total: -50.88 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.23 3.51 -66.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234583156.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.698 kcal (2) G-P(sol) polarization free energy of solvation -70.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds