Wall clock time and date at job start Sun Mar 29 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99834 * 2 1 4 4 H 1.09010 * 112.90755 * 21.74342 * 3 2 1 5 5 C 1.53777 * 113.61472 * 250.49545 * 3 2 1 6 6 C 1.53785 * 87.08068 * 270.88212 * 5 3 2 7 7 H 1.09003 * 113.61588 * 89.19633 * 6 5 3 8 8 N 1.46898 * 113.61288 * 220.01820 * 6 5 3 9 9 C 1.46899 * 110.99910 * 254.13056 * 8 6 5 10 10 C 1.50703 * 109.47180 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99603 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 C 1.53781 * 87.16973 * 334.60794 * 6 5 3 19 19 C 1.53003 * 113.61497 * 139.93993 * 18 6 5 20 20 C 1.53001 * 113.61478 * 270.83921 * 18 6 5 21 21 H 1.09000 * 109.46942 * 60.00609 * 1 2 3 22 22 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47153 * 299.99736 * 1 2 3 24 24 H 1.09004 * 113.62003 * 156.33498 * 5 3 2 25 25 H 1.09005 * 113.61378 * 25.42534 * 5 3 2 26 26 H 1.00901 * 110.99670 * 130.18126 * 8 6 5 27 27 H 1.09005 * 109.47198 * 60.00400 * 9 8 6 28 28 H 1.08998 * 109.47329 * 300.00347 * 9 8 6 29 29 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 30 30 H 1.09001 * 109.47263 * 59.99539 * 19 18 6 31 31 H 1.08995 * 109.47245 * 180.02562 * 19 18 6 32 32 H 1.08996 * 109.46804 * 300.00006 * 19 18 6 33 33 H 1.09003 * 109.47138 * 60.00207 * 20 18 6 34 34 H 1.08996 * 109.47211 * 179.97438 * 20 18 6 35 35 H 1.08996 * 109.47286 * 300.00131 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3307 2.0724 0.3720 5 6 2.6905 1.6769 -1.3281 6 6 3.9724 1.0481 -0.7567 7 1 4.0662 -0.0177 -0.9648 8 7 5.1915 1.8017 -1.0787 9 6 5.9789 1.1133 -2.1102 10 6 7.2192 1.9139 -2.4132 11 1 7.4042 2.8411 -1.8914 12 6 8.1177 1.4626 -3.3566 13 7 7.8926 0.3332 -3.9918 14 14 9.6554 2.4546 -3.7317 15 1 9.6745 3.6763 -2.8876 16 1 9.6562 2.8436 -5.1648 17 1 10.8577 1.6329 -3.4412 18 6 3.4091 1.3557 0.6408 19 6 3.6579 0.2425 1.6605 20 6 3.7936 2.7406 1.1654 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.7677 2.7515 -1.4938 25 1 2.2885 1.1426 -2.1890 26 1 5.7446 1.9655 -0.2509 27 1 5.3812 1.0118 -3.0162 28 1 6.2639 0.1247 -1.7504 29 1 7.0943 -0.1821 -3.7967 30 1 4.7306 0.0831 1.7700 31 1 3.2327 0.5291 2.6223 32 1 3.1872 -0.6781 1.3155 33 1 3.4144 3.5045 0.4866 34 1 3.3609 2.8873 2.1550 35 1 4.8791 2.8169 1.2282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234838339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:04 Heat of formation + Delta-G solvation = -35.155419 kcal Electronic energy + Delta-G solvation = -14750.732133 eV Core-core repulsion = 12363.176092 eV Total energy + Delta-G solvation = -2387.556041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02542 -36.51953 -34.08189 -31.78719 -30.18965 -27.43567 -26.60476 -25.85444 -23.08228 -22.21270 -21.40052 -18.22372 -16.89387 -16.27682 -15.43420 -15.15112 -14.51766 -14.42093 -13.71895 -13.56463 -12.91741 -12.84406 -12.42106 -12.14898 -11.92324 -11.76969 -11.45594 -11.28547 -11.23160 -10.78626 -10.56600 -10.49688 -10.09484 -10.05740 -9.69629 -9.25446 -8.53725 -8.37129 -7.34581 -6.33878 -4.02419 3.46506 3.51007 3.64766 3.69908 4.55961 4.71519 4.78630 4.99447 5.18257 5.26033 5.34574 5.43130 5.45499 5.49136 5.55123 5.59461 5.85561 5.88740 5.98229 6.08222 6.16629 6.29371 6.35831 6.44299 6.65517 6.71720 7.05344 7.22733 7.32114 7.88063 8.22256 8.53364 8.63580 8.91784 9.69876 11.06139 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050289 B = 0.006551 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.652495 B = 4272.863210 C = 4491.622099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.069 3.931 4 H 0.070 0.930 5 C -0.144 4.144 6 C 0.077 3.923 7 H 0.065 0.935 8 N -0.669 5.669 9 C 0.183 3.817 10 C -0.594 4.594 11 H 0.056 0.944 12 C 0.013 3.987 13 N -0.916 5.916 14 Si 1.079 2.921 15 H -0.289 1.289 16 H -0.287 1.287 17 H -0.288 1.288 18 C -0.090 4.090 19 C -0.132 4.132 20 C -0.118 4.118 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.038 0.962 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.331 0.669 27 H 0.017 0.983 28 H -0.025 1.025 29 H 0.268 0.732 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 1.853 10.135 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.010 3.990 4 H 0.087 0.913 5 C -0.183 4.183 6 C -0.034 4.034 7 H 0.082 0.918 8 N -0.300 5.300 9 C 0.055 3.945 10 C -0.633 4.633 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.553 5.553 14 Si 0.907 3.093 15 H -0.215 1.215 16 H -0.214 1.214 17 H -0.215 1.215 18 C -0.091 4.091 19 C -0.190 4.190 20 C -0.175 4.175 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.057 0.943 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.035 0.965 28 H -0.008 1.008 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.486 2.128 8.747 14.594 hybrid contribution -1.309 -0.658 1.317 1.970 sum -12.796 1.470 10.064 16.346 Atomic orbital electron populations 1.22754 0.81557 1.02387 0.99735 1.87868 1.19072 1.26982 1.94587 1.23204 0.93767 0.84329 0.97674 0.91251 1.23532 0.96594 1.01807 0.96357 1.22941 0.91603 0.96041 0.92837 0.91765 1.60748 1.07547 1.48179 1.13550 1.19696 0.92602 0.92049 0.90129 1.22070 1.06318 1.09379 1.25492 0.92572 1.25865 1.02443 0.97330 0.93404 1.70724 1.28976 1.13836 1.41725 0.83410 0.74878 0.74861 0.76113 1.21473 1.21371 1.21462 1.22382 0.94500 0.96637 0.95541 1.21605 1.01195 0.98550 0.97620 1.21435 1.02215 0.94245 0.99635 0.94148 0.89893 0.94314 0.88791 0.91764 0.85028 0.96483 1.00752 0.92209 0.92879 0.93218 0.91623 0.91910 0.93181 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.86 101.05 1.10 1.44 16 2 O -0.37 -5.31 9.17 -35.23 -0.32 -5.63 16 3 C 0.07 0.98 3.78 -25.83 -0.10 0.88 16 4 H 0.07 0.86 7.86 -51.92 -0.41 0.45 16 5 C -0.14 -2.41 7.36 -25.92 -0.19 -2.60 16 6 C 0.08 1.45 3.50 -66.90 -0.23 1.21 16 7 H 0.06 1.35 7.84 -51.93 -0.41 0.94 16 8 N -0.67 -14.80 6.03 -107.13 -0.65 -15.45 16 9 C 0.18 4.94 4.61 -4.98 -0.02 4.91 16 10 C -0.59 -17.42 9.32 -34.44 -0.32 -17.74 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 13 N -0.92 -28.76 13.65 55.43 0.76 -28.00 16 14 Si 1.08 25.95 29.90 -169.99 -5.08 20.87 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.09 -1.36 1.26 -153.60 -0.19 -1.55 16 19 C -0.13 -1.89 9.05 37.16 0.34 -1.55 16 20 C -0.12 -1.61 8.47 37.16 0.31 -1.29 16 21 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 1.56 7.66 -51.93 -0.40 1.16 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.33 7.05 7.00 -39.29 -0.28 6.78 16 27 H 0.02 0.50 8.01 -51.93 -0.42 0.08 16 28 H -0.03 -0.72 8.00 -51.93 -0.42 -1.13 16 29 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.98 6.96 -51.93 -0.36 0.62 16 33 H 0.06 0.86 7.35 -51.93 -0.38 0.48 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -31.62 283.19 -6.31 -37.93 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.87 Total: 2.02 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 0.59 Total: -16.00 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.11 Total: -43.45 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.32 Total: -5.63 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.62 -6.31 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234838339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.778 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds