Wall clock time and date at job start Sun Mar 29 2020 22:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99834 * 2 1 4 4 H 1.09010 * 112.90755 * 21.74342 * 3 2 1 5 5 C 1.53777 * 113.61472 * 250.49545 * 3 2 1 6 6 C 1.53785 * 87.08068 * 270.88212 * 5 3 2 7 7 H 1.09003 * 113.61588 * 89.19633 * 6 5 3 8 8 N 1.46898 * 113.61288 * 220.01820 * 6 5 3 9 9 C 1.46899 * 110.99910 * 254.13056 * 8 6 5 10 10 C 1.50703 * 109.47180 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99603 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 C 1.53781 * 87.16973 * 334.60794 * 6 5 3 19 19 C 1.53003 * 113.61497 * 139.93993 * 18 6 5 20 20 C 1.53001 * 113.61478 * 270.83921 * 18 6 5 21 21 H 1.09000 * 109.46942 * 60.00609 * 1 2 3 22 22 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47153 * 299.99736 * 1 2 3 24 24 H 1.09004 * 113.62003 * 156.33498 * 5 3 2 25 25 H 1.09005 * 113.61378 * 25.42534 * 5 3 2 26 26 H 1.00901 * 110.99670 * 130.18126 * 8 6 5 27 27 H 1.09005 * 109.47198 * 60.00400 * 9 8 6 28 28 H 1.08998 * 109.47329 * 300.00347 * 9 8 6 29 29 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 30 30 H 1.09001 * 109.47263 * 59.99539 * 19 18 6 31 31 H 1.08995 * 109.47245 * 180.02562 * 19 18 6 32 32 H 1.08996 * 109.46804 * 300.00006 * 19 18 6 33 33 H 1.09003 * 109.47138 * 60.00207 * 20 18 6 34 34 H 1.08996 * 109.47211 * 179.97438 * 20 18 6 35 35 H 1.08996 * 109.47286 * 300.00131 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3307 2.0724 0.3720 5 6 2.6905 1.6769 -1.3281 6 6 3.9724 1.0481 -0.7567 7 1 4.0662 -0.0177 -0.9648 8 7 5.1915 1.8017 -1.0787 9 6 5.9789 1.1133 -2.1102 10 6 7.2192 1.9139 -2.4132 11 1 7.4042 2.8411 -1.8914 12 6 8.1177 1.4626 -3.3566 13 7 7.8926 0.3332 -3.9918 14 14 9.6554 2.4546 -3.7317 15 1 9.6745 3.6763 -2.8876 16 1 9.6562 2.8436 -5.1648 17 1 10.8577 1.6329 -3.4412 18 6 3.4091 1.3557 0.6408 19 6 3.6579 0.2425 1.6605 20 6 3.7936 2.7406 1.1654 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.7677 2.7515 -1.4938 25 1 2.2885 1.1426 -2.1890 26 1 5.7446 1.9655 -0.2509 27 1 5.3812 1.0118 -3.0162 28 1 6.2639 0.1247 -1.7504 29 1 7.0943 -0.1821 -3.7967 30 1 4.7306 0.0831 1.7700 31 1 3.2327 0.5291 2.6223 32 1 3.1872 -0.6781 1.3155 33 1 3.4144 3.5045 0.4866 34 1 3.3609 2.8873 2.1550 35 1 4.8791 2.8169 1.2282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234838339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:03 Heat of formation + Delta-G solvation = -57.177150 kcal Electronic energy + Delta-G solvation = -14751.687067 eV Core-core repulsion = 12363.176092 eV Total energy + Delta-G solvation = -2388.510975 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30590 -37.74937 -36.08115 -33.77982 -31.45077 -28.56588 -28.16315 -27.26983 -24.87383 -23.68682 -23.08570 -19.67790 -18.84965 -17.60480 -16.66129 -16.39674 -16.04901 -15.78716 -15.57972 -15.26417 -14.22738 -14.17672 -13.99951 -13.84709 -13.21039 -13.09138 -12.86112 -12.68958 -12.55402 -12.46992 -12.39874 -11.90247 -11.79687 -11.34607 -11.14414 -10.65709 -10.61741 -10.38764 -9.24345 -8.73856 -6.44772 1.52684 1.63020 1.80357 2.54900 2.67659 3.11609 3.46347 3.49055 3.55600 3.88592 4.10084 4.26584 4.28010 4.49806 4.55118 4.59488 4.72277 4.76624 4.77466 4.83861 4.90239 4.94697 4.97688 5.02264 5.11738 5.20425 5.46633 5.48897 5.75015 5.99848 6.30635 6.37657 6.53746 6.68473 7.39034 8.65598 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050289 B = 0.006551 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.652495 B = 4272.863210 C = 4491.622099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.086 3.914 4 H 0.102 0.898 5 C -0.145 4.145 6 C 0.056 3.944 7 H 0.034 0.966 8 N -0.661 5.661 9 C 0.196 3.804 10 C -0.609 4.609 11 H 0.059 0.941 12 C -0.040 4.040 13 N -0.938 5.938 14 Si 1.132 2.868 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.080 4.080 19 C -0.129 4.129 20 C -0.115 4.115 21 H 0.045 0.955 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.335 0.665 27 H -0.011 1.011 28 H -0.052 1.052 29 H 0.251 0.749 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 3.408 11.628 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.028 3.972 4 H 0.120 0.880 5 C -0.184 4.184 6 C -0.054 4.054 7 H 0.052 0.948 8 N -0.292 5.292 9 C 0.067 3.933 10 C -0.647 4.647 11 H 0.077 0.923 12 C -0.237 4.237 13 N -0.576 5.576 14 Si 0.952 3.048 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.081 4.081 19 C -0.186 4.186 20 C -0.173 4.173 21 H 0.064 0.936 22 H 0.114 0.886 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.070 0.930 26 H 0.155 0.845 27 H 0.007 0.993 28 H -0.034 1.034 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.190 3.678 10.265 16.355 hybrid contribution -1.198 -1.204 0.863 1.905 sum -13.388 2.474 11.127 17.583 Atomic orbital electron populations 1.23002 0.79366 1.03764 1.00993 1.87852 1.21532 1.27108 1.94541 1.23041 0.93861 0.85215 0.95106 0.88017 1.23546 0.95628 1.01599 0.97633 1.23118 0.90874 0.94259 0.97163 0.94818 1.60688 1.07782 1.47834 1.12890 1.19368 0.92368 0.91046 0.90490 1.22419 1.07095 1.09560 1.25579 0.92282 1.27591 1.05780 0.97406 0.92901 1.70871 1.28653 1.15055 1.42988 0.82763 0.71083 0.74217 0.76745 1.19150 1.20403 1.20307 1.22386 0.94494 0.97920 0.93330 1.21573 1.00618 0.97817 0.98604 1.21442 1.01690 0.92850 1.01276 0.93626 0.88643 0.92212 0.88414 0.93005 0.84547 0.99273 1.03423 0.93935 0.93918 0.90434 0.92747 0.91886 0.90050 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.86 113.37 1.23 1.68 16 2 O -0.39 -10.71 9.17 -148.98 -1.37 -12.08 16 3 C 0.09 2.29 3.78 31.18 0.12 2.40 16 4 H 0.10 2.10 7.86 -2.38 -0.02 2.08 16 5 C -0.15 -4.83 7.36 31.12 0.23 -4.60 16 6 C 0.06 2.17 3.50 45.44 0.16 2.33 16 7 H 0.03 1.50 7.84 -2.39 -0.02 1.49 16 8 N -0.66 -29.94 6.03 -492.84 -2.97 -32.91 16 9 C 0.20 11.07 4.61 85.56 0.39 11.46 16 10 C -0.61 -36.28 9.32 25.60 0.24 -36.04 16 11 H 0.06 3.43 7.81 -2.91 -0.02 3.40 16 12 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 13 N -0.94 -60.33 13.65 21.45 0.29 -60.04 16 14 Si 1.13 51.57 29.90 68.60 2.05 53.62 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 C -0.08 -2.32 1.26 -51.60 -0.07 -2.38 16 19 C -0.13 -3.49 9.05 71.98 0.65 -2.83 16 20 C -0.12 -2.84 8.47 71.98 0.61 -2.24 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 24 H 0.10 3.16 7.66 -2.39 -0.02 3.14 16 25 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.34 14.47 7.00 -89.69 -0.63 13.84 16 27 H -0.01 -0.66 8.01 -2.38 -0.02 -0.68 16 28 H -0.05 -3.14 8.00 -2.39 -0.02 -3.16 16 29 H 0.25 16.59 7.22 -92.71 -0.67 15.92 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.59 6.96 -2.39 -0.02 1.57 16 33 H 0.06 1.56 7.35 -2.39 -0.02 1.54 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.53 6.75 -2.39 -0.02 1.51 16 Total: -1.00 -69.62 283.19 2.56 -67.07 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.52 Total: 16.48 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 4.03 Total: -32.13 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -2.68 Total: -92.95 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.37 Total: -12.08 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -69.62 2.56 -67.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234838339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.888 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds