Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.51984 * 2 1 4 4 C 1.53036 * 109.50208 * 239.92149 * 2 1 3 5 5 C 1.53044 * 109.53770 * 301.41279 * 4 2 1 6 6 C 1.53189 * 109.31141 * 298.63649 * 5 4 2 7 7 N 1.46927 * 108.77728 * 54.63390 * 6 5 4 8 8 C 1.36937 * 120.63029 * 126.41544 * 7 6 5 9 9 H 1.08004 * 119.99600 * 144.78742 * 8 7 6 10 10 C 1.38803 * 120.00119 * 324.78678 * 8 7 6 11 11 N 1.31614 * 120.00191 * 343.73577 * 10 8 7 12 12 Si 1.86805 * 119.99979 * 163.72886 * 10 8 7 13 13 H 1.48493 * 109.47294 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46767 * 120.00548 * 12 10 8 15 15 H 1.48501 * 109.47198 * 239.99755 * 12 10 8 16 16 C 1.46923 * 118.73924 * 306.38840 * 7 6 5 17 17 H 1.08998 * 109.70611 * 293.75869 * 16 7 6 18 18 C 1.50694 * 109.59039 * 173.39842 * 16 7 6 19 19 O 1.20828 * 119.99602 * 324.92605 * 18 16 7 20 20 O 1.34222 * 120.00436 * 144.93120 * 18 16 7 21 21 H 1.08998 * 109.46945 * 299.91583 * 1 2 3 22 22 H 1.08994 * 109.46958 * 59.92078 * 1 2 3 23 23 H 1.09002 * 109.46784 * 179.91360 * 1 2 3 24 24 H 1.09002 * 109.46370 * 61.43237 * 4 2 1 25 25 H 1.09001 * 109.46160 * 181.39395 * 4 2 1 26 26 H 1.08995 * 109.49777 * 178.68199 * 5 4 2 27 27 H 1.09002 * 109.52258 * 58.59997 * 5 4 2 28 28 H 1.09001 * 109.58400 * 294.84397 * 6 5 4 29 29 H 1.09002 * 109.58592 * 174.42248 * 6 5 4 30 30 H 0.96999 * 120.00441 * 179.97438 * 11 10 8 31 31 H 0.96697 * 117.00450 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0409 -0.7230 -1.2483 5 6 1.5032 -2.1557 -1.2660 6 6 2.0141 -2.9039 -0.0308 7 7 1.6515 -2.1381 1.1696 8 6 0.9639 -2.7315 2.1944 9 1 1.1672 -2.4478 3.2165 10 6 0.0057 -3.6973 1.9196 11 7 -0.4739 -3.8204 0.7002 12 14 -0.6031 -4.8228 3.2806 13 1 0.0877 -4.4827 4.5503 14 1 -2.0676 -4.6455 3.4515 15 1 -0.3140 -6.2345 2.9220 16 6 2.0413 -0.7238 1.2497 17 1 3.1272 -0.6441 1.2994 18 6 1.4322 -0.1007 2.4791 19 8 0.3368 -0.4477 2.8527 20 8 2.1063 0.8399 3.1591 21 1 -0.3633 0.5125 0.8907 22 1 -0.3633 0.5150 -0.8892 23 1 -0.3633 -1.0277 -0.0015 24 1 1.6989 -0.1958 -2.1389 25 1 3.1306 -0.7443 -1.2352 26 1 1.8483 -2.6627 -2.1671 27 1 0.4134 -2.1360 -1.2544 28 1 3.0981 -3.0042 -0.0868 29 1 1.5555 -3.8918 0.0137 30 1 -1.1433 -4.4956 0.5080 31 1 1.6750 1.2100 3.9414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235284973.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = -71.323934 kcal Electronic energy + Delta-G solvation = -15588.638546 eV Core-core repulsion = 13063.681026 eV Total energy + Delta-G solvation = -2524.957520 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74517 -37.45131 -35.16209 -33.34696 -30.81542 -30.52425 -26.48033 -25.33183 -23.28647 -21.58021 -20.51485 -17.95294 -17.25581 -16.88572 -15.54042 -14.79735 -14.48796 -14.35646 -13.65456 -13.09244 -12.84909 -12.54973 -12.06928 -11.96565 -11.19762 -11.08519 -10.96197 -10.74987 -10.63734 -10.31700 -10.20461 -10.03139 -9.93065 -9.68636 -9.24781 -9.09222 -8.31630 -6.53672 -5.74416 -3.23301 3.16248 3.41985 3.49747 3.52852 3.82735 4.54832 5.38409 5.41386 5.58233 5.68540 5.78322 6.06234 6.14632 6.26940 6.35317 6.48743 6.57869 6.67001 6.73326 6.79474 6.88892 6.99568 7.27119 7.40345 7.56206 7.68198 7.88613 8.47810 8.85960 9.21566 9.79009 10.37243 11.32170 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.016133 C = 0.011972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.716823 B = 1735.173491 C = 2338.303989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.055 0.945 4 C -0.103 4.103 5 C -0.134 4.134 6 C 0.171 3.829 7 N -0.574 5.574 8 C -0.233 4.233 9 H 0.062 0.938 10 C 0.013 3.987 11 N -0.893 5.893 12 Si 0.902 3.098 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.290 1.290 16 C 0.184 3.816 17 H 0.055 0.945 18 C 0.465 3.535 19 O -0.467 6.467 20 O -0.537 6.537 21 H 0.042 0.958 22 H 0.033 0.967 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.004 0.996 29 H 0.093 0.907 30 H 0.252 0.748 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 6.209 -1.588 7.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.073 0.927 4 C -0.141 4.141 5 C -0.173 4.173 6 C 0.046 3.954 7 N -0.300 5.300 8 C -0.362 4.362 9 H 0.080 0.920 10 C -0.186 4.186 11 N -0.537 5.537 12 Si 0.732 3.268 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.217 1.217 16 C 0.077 3.923 17 H 0.073 0.927 18 C 0.305 3.695 19 O -0.349 6.349 20 O -0.349 6.349 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.022 0.978 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.437 5.812 -1.874 7.549 hybrid contribution -0.819 -0.190 1.172 1.442 sum 3.618 5.622 -0.702 6.722 Atomic orbital electron populations 1.21901 0.94212 1.05138 0.99078 1.21449 0.97473 0.97377 0.95404 0.92679 1.21438 0.99260 0.97418 0.95956 1.22004 1.03068 0.93991 0.98219 1.20836 0.93879 0.97103 0.83578 1.44178 1.65275 1.01241 1.19308 1.19025 1.13750 1.16808 0.86653 0.92041 1.25090 0.95574 1.01643 0.96285 1.69970 1.29679 1.34903 1.19134 0.86232 0.78351 0.80272 0.81909 1.20423 1.21775 1.21722 1.20341 0.96763 0.87772 0.87471 0.92724 1.23727 0.84336 0.76692 0.84792 1.90734 1.20681 1.56795 1.66705 1.84594 1.53294 1.54144 1.42861 0.93866 0.94805 0.88419 0.93283 0.93090 0.94021 0.89902 0.97842 0.88861 0.93828 0.74958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.13 37.16 0.30 -2.76 16 2 C -0.10 -1.85 2.80 -90.50 -0.25 -2.10 16 3 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.10 -1.83 5.43 -26.69 -0.14 -1.98 16 5 C -0.13 -2.72 5.74 -26.61 -0.15 -2.87 16 6 C 0.17 3.91 5.66 -3.71 -0.02 3.89 16 7 N -0.57 -14.13 2.39 -166.09 -0.40 -14.52 16 8 C -0.23 -6.40 7.23 -15.06 -0.11 -6.51 16 9 H 0.06 1.77 6.66 -52.48 -0.35 1.42 16 10 C 0.01 0.37 4.93 -17.44 -0.09 0.29 16 11 N -0.89 -25.03 11.33 55.49 0.63 -24.40 16 12 Si 0.90 22.36 29.58 -169.99 -5.03 17.34 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 C 0.18 3.94 3.09 -68.75 -0.21 3.73 16 17 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 18 C 0.46 9.96 5.86 36.00 0.21 10.17 16 19 O -0.47 -11.60 13.45 -18.75 -0.25 -11.85 16 20 O -0.54 -9.15 13.42 -39.24 -0.53 -9.67 16 21 H 0.04 0.93 6.37 -51.93 -0.33 0.60 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.10 2.45 5.97 -51.93 -0.31 2.14 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.91 6.24 -51.93 -0.32 1.59 16 28 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.09 2.40 5.91 -51.93 -0.31 2.09 16 30 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.39 4.89 9.10 45.56 0.41 5.30 16 LS Contribution 245.93 15.07 3.71 3.71 Total: -1.00 -30.21 245.93 -5.64 -35.85 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.30 Total: 1.71 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.47 Total: 1.85 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.23 Total: -38.93 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.78 Total: -21.52 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.21 -5.64 -35.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235284973.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.474 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds