Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.51984 * 2 1 4 4 C 1.53036 * 109.50208 * 239.92149 * 2 1 3 5 5 C 1.53044 * 109.53770 * 301.41279 * 4 2 1 6 6 C 1.53189 * 109.31141 * 298.63649 * 5 4 2 7 7 N 1.46927 * 108.77728 * 54.63390 * 6 5 4 8 8 C 1.36937 * 120.63029 * 126.41544 * 7 6 5 9 9 H 1.08004 * 119.99600 * 144.78742 * 8 7 6 10 10 C 1.38803 * 120.00119 * 324.78678 * 8 7 6 11 11 N 1.31614 * 120.00191 * 343.73577 * 10 8 7 12 12 Si 1.86805 * 119.99979 * 163.72886 * 10 8 7 13 13 H 1.48493 * 109.47294 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46767 * 120.00548 * 12 10 8 15 15 H 1.48501 * 109.47198 * 239.99755 * 12 10 8 16 16 C 1.46923 * 118.73924 * 306.38840 * 7 6 5 17 17 H 1.08998 * 109.70611 * 293.75869 * 16 7 6 18 18 C 1.50694 * 109.59039 * 173.39842 * 16 7 6 19 19 O 1.20828 * 119.99602 * 324.92605 * 18 16 7 20 20 O 1.34222 * 120.00436 * 144.93120 * 18 16 7 21 21 H 1.08998 * 109.46945 * 299.91583 * 1 2 3 22 22 H 1.08994 * 109.46958 * 59.92078 * 1 2 3 23 23 H 1.09002 * 109.46784 * 179.91360 * 1 2 3 24 24 H 1.09002 * 109.46370 * 61.43237 * 4 2 1 25 25 H 1.09001 * 109.46160 * 181.39395 * 4 2 1 26 26 H 1.08995 * 109.49777 * 178.68199 * 5 4 2 27 27 H 1.09002 * 109.52258 * 58.59997 * 5 4 2 28 28 H 1.09001 * 109.58400 * 294.84397 * 6 5 4 29 29 H 1.09002 * 109.58592 * 174.42248 * 6 5 4 30 30 H 0.96999 * 120.00441 * 179.97438 * 11 10 8 31 31 H 0.96697 * 117.00450 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0409 -0.7230 -1.2483 5 6 1.5032 -2.1557 -1.2660 6 6 2.0141 -2.9039 -0.0308 7 7 1.6515 -2.1381 1.1696 8 6 0.9639 -2.7315 2.1944 9 1 1.1672 -2.4478 3.2165 10 6 0.0057 -3.6973 1.9196 11 7 -0.4739 -3.8204 0.7002 12 14 -0.6031 -4.8228 3.2806 13 1 0.0877 -4.4827 4.5503 14 1 -2.0676 -4.6455 3.4515 15 1 -0.3140 -6.2345 2.9220 16 6 2.0413 -0.7238 1.2497 17 1 3.1272 -0.6441 1.2994 18 6 1.4322 -0.1007 2.4791 19 8 0.3368 -0.4477 2.8527 20 8 2.1063 0.8399 3.1591 21 1 -0.3633 0.5125 0.8907 22 1 -0.3633 0.5150 -0.8892 23 1 -0.3633 -1.0277 -0.0015 24 1 1.6989 -0.1958 -2.1389 25 1 3.1306 -0.7443 -1.2352 26 1 1.8483 -2.6627 -2.1671 27 1 0.4134 -2.1360 -1.2544 28 1 3.0981 -3.0042 -0.0868 29 1 1.5555 -3.8918 0.0137 30 1 -1.1433 -4.4956 0.5080 31 1 1.6750 1.2100 3.9414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235284973.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = -91.491708 kcal Electronic energy + Delta-G solvation = -15589.513087 eV Core-core repulsion = 13063.681026 eV Total energy + Delta-G solvation = -2525.832060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40687 -39.07324 -36.77072 -35.21496 -32.51233 -32.40064 -28.21984 -27.10827 -25.03855 -23.34814 -22.11910 -19.63693 -18.94738 -18.64584 -17.33393 -16.44967 -16.33259 -16.07002 -15.39472 -14.79864 -14.59534 -14.12522 -13.75055 -13.58581 -13.13584 -12.90079 -12.78694 -12.53840 -12.39891 -12.08815 -11.93715 -11.75013 -11.68568 -11.35920 -10.90256 -10.83252 -10.31634 -8.46699 -7.79577 -5.29995 1.41260 1.45402 1.49369 1.54738 2.31726 2.54011 3.36264 3.65953 3.98650 4.15461 4.25343 4.48782 4.60371 4.74209 4.86146 4.91371 4.99206 5.02075 5.17263 5.24593 5.32310 5.44962 5.63679 5.67916 5.81586 5.84827 6.00235 6.47341 7.21740 7.30786 7.81714 8.36261 9.23104 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.016133 C = 0.011972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.716823 B = 1735.173491 C = 2338.303989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.089 0.911 4 C -0.096 4.096 5 C -0.127 4.127 6 C 0.168 3.832 7 N -0.589 5.589 8 C -0.230 4.230 9 H 0.044 0.956 10 C -0.033 4.033 11 N -0.910 5.910 12 Si 0.949 3.051 13 H -0.279 1.279 14 H -0.299 1.299 15 H -0.285 1.285 16 C 0.173 3.827 17 H 0.077 0.923 18 C 0.470 3.530 19 O -0.511 6.511 20 O -0.519 6.519 21 H 0.026 0.974 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.246 0.754 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 7.688 -2.188 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.133 4.133 5 C -0.165 4.165 6 C 0.043 3.957 7 N -0.315 5.315 8 C -0.361 4.361 9 H 0.061 0.939 10 C -0.230 4.230 11 N -0.555 5.555 12 Si 0.779 3.221 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.211 1.211 16 C 0.066 3.934 17 H 0.094 0.906 18 C 0.312 3.688 19 O -0.397 6.397 20 O -0.333 6.333 21 H 0.046 0.954 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 6.000 7.320 -2.462 9.779 hybrid contribution -1.220 -0.549 1.414 1.946 sum 4.780 6.770 -1.048 8.353 Atomic orbital electron populations 1.21749 0.95924 1.02267 0.99428 1.21479 0.95849 0.99097 0.94857 0.89290 1.21417 1.00527 0.95264 0.96136 1.21851 1.00970 0.96049 0.97667 1.20813 0.94514 0.95895 0.84438 1.44217 1.65072 1.03073 1.19140 1.18947 1.13439 1.16972 0.86760 0.93873 1.25614 0.96362 1.03141 0.97878 1.70091 1.30155 1.35217 1.20029 0.85495 0.77193 0.79250 0.80135 1.20400 1.22653 1.21098 1.20553 0.97745 0.86306 0.88783 0.90591 1.23756 0.83667 0.76571 0.84820 1.90731 1.22585 1.58571 1.67840 1.84507 1.52393 1.52763 1.43639 0.95441 0.92412 0.92880 0.90727 0.90741 0.91970 0.93257 0.95989 0.92329 0.94456 0.72294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 8.13 71.98 0.58 -4.97 16 2 C -0.09 -3.26 2.80 -10.71 -0.03 -3.29 16 3 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 4 C -0.10 -3.04 5.43 30.62 0.17 -2.87 16 5 C -0.13 -4.94 5.74 30.67 0.18 -4.76 16 6 C 0.17 7.59 5.66 86.36 0.49 8.08 16 7 N -0.59 -28.71 2.39 -679.39 -1.62 -30.33 16 8 C -0.23 -12.86 7.23 84.03 0.61 -12.25 16 9 H 0.04 2.53 6.66 -2.91 -0.02 2.52 16 10 C -0.03 -1.87 4.93 84.86 0.42 -1.45 16 11 N -0.91 -52.52 11.33 21.65 0.25 -52.27 16 12 Si 0.95 46.97 29.58 68.60 2.03 49.00 16 13 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 14 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 15 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 16 C 0.17 7.03 3.09 44.23 0.14 7.17 16 17 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 18 C 0.47 19.45 5.86 71.23 0.42 19.87 16 19 O -0.51 -25.46 13.45 21.96 0.30 -25.17 16 20 O -0.52 -16.20 13.42 -51.34 -0.69 -16.89 16 21 H 0.03 1.16 6.37 -2.39 -0.02 1.14 16 22 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.05 2.68 5.97 -2.39 -0.01 2.66 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 2.27 6.24 -2.39 -0.01 2.26 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 3.06 5.91 -2.39 -0.01 3.05 16 30 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.42 9.17 9.10 -74.06 -0.67 8.50 16 Total: -1.00 -66.37 245.93 3.69 -62.69 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.46 Total: 7.46 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 2.97 Total: 5.52 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.38 Total: -82.60 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.39 Total: -42.06 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -66.37 3.69 -62.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235284973.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.806 kcal (2) G-P(sol) polarization free energy of solvation -66.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds