Wall clock time and date at job start Sun Mar 29 2020 21:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58505 * 2 1 4 4 C 1.53191 * 109.59123 * 239.56891 * 2 1 3 5 5 C 1.53032 * 109.31545 * 185.57707 * 4 2 1 6 6 H 1.08996 * 109.46528 * 301.34787 * 5 4 2 7 7 C 1.50701 * 109.45936 * 181.38392 * 5 4 2 8 8 O 1.20818 * 120.00257 * 0.02562 * 7 5 4 9 9 O 1.34235 * 119.99833 * 179.97438 * 7 5 4 10 10 C 1.53356 * 109.60725 * 61.37659 * 5 4 2 11 11 C 1.53196 * 109.14844 * 298.71187 * 10 5 4 12 12 N 1.46922 * 108.89273 * 54.57635 * 11 10 5 13 13 C 1.36935 * 120.63349 * 126.29888 * 12 11 10 14 14 H 1.07996 * 120.00217 * 209.06504 * 13 12 11 15 15 C 1.38821 * 119.99448 * 29.06501 * 13 12 11 16 16 N 1.31610 * 120.00207 * 15.04171 * 15 13 12 17 17 Si 1.86801 * 119.99409 * 195.04472 * 15 13 12 18 18 H 1.48498 * 109.47137 * 90.00076 * 17 15 13 19 19 H 1.48507 * 109.46760 * 209.99805 * 17 15 13 20 20 H 1.48502 * 109.47359 * 329.99565 * 17 15 13 21 21 H 1.08996 * 109.47274 * 299.72384 * 1 2 3 22 22 H 1.09003 * 109.47130 * 59.71835 * 1 2 3 23 23 H 1.09000 * 109.47253 * 179.71812 * 1 2 3 24 24 H 1.08995 * 109.49689 * 305.53459 * 4 2 1 25 25 H 1.09006 * 109.49390 * 65.62340 * 4 2 1 26 26 H 0.96697 * 116.99638 * 179.97438 * 9 7 5 27 27 H 1.08996 * 109.68985 * 178.74432 * 10 5 4 28 28 H 1.09001 * 109.47328 * 58.54917 * 10 5 4 29 29 H 1.09001 * 109.58358 * 294.72097 * 11 10 5 30 30 H 1.08997 * 109.58739 * 174.43558 * 11 10 5 31 31 H 0.97005 * 120.00134 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8494 -1.1689 6 1 4.0062 0.1459 -1.0994 7 6 4.0795 -1.5380 -2.4078 8 8 3.3054 -1.8967 -3.2633 9 8 5.3957 -1.7520 -2.5613 10 6 3.9595 -1.6673 0.0677 11 6 3.4650 -0.9452 1.3251 12 7 2.0225 -0.6980 1.1955 13 6 1.1535 -1.1107 2.1700 14 1 0.1361 -1.3662 1.9133 15 6 1.5805 -1.2006 3.4878 16 7 2.7029 -0.6208 3.8570 17 14 0.5619 -2.1445 4.7372 18 1 0.9975 -3.5640 4.7599 19 1 0.7516 -1.5469 6.0834 20 1 -0.8731 -2.0729 4.3615 21 1 -0.3633 0.5095 0.8924 22 1 -0.3633 0.5182 -0.8875 23 1 -0.3634 -1.0276 -0.0051 24 1 1.6030 -1.7269 -1.2891 25 1 1.7660 -0.1696 -2.1366 26 1 5.6764 -2.1976 -3.3723 27 1 5.0436 -1.7714 0.1106 28 1 3.5008 -2.6544 0.0109 29 1 3.9902 0.0039 1.4318 30 1 3.6519 -1.5668 2.2007 31 1 3.0010 -0.6833 4.7779 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235352029.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:21 Heat of formation + Delta-G solvation = -83.794826 kcal Electronic energy + Delta-G solvation = -14881.088154 eV Core-core repulsion = 12355.589855 eV Total energy + Delta-G solvation = -2525.498299 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16930 -37.58502 -35.88162 -33.23798 -32.06232 -30.02348 -26.54195 -25.62039 -23.38098 -21.38004 -20.39917 -19.13261 -17.75051 -16.44962 -16.16561 -15.24399 -15.10668 -13.92129 -13.78850 -13.37698 -13.16249 -12.85510 -12.53730 -11.60629 -11.33552 -11.24943 -11.18079 -10.94894 -10.86675 -10.63530 -10.35116 -10.29407 -10.02880 -9.93880 -9.55213 -9.40210 -8.46972 -6.65857 -5.78349 -3.21827 2.47697 3.33198 3.38781 3.45463 3.46126 4.49127 5.17915 5.29506 5.39022 5.43789 5.56350 5.83022 5.92542 6.16320 6.32801 6.34971 6.42795 6.47943 6.57087 6.63643 6.70721 6.75341 7.03467 7.12648 7.32952 7.63528 7.82778 8.13764 8.46120 9.21827 9.85094 10.41703 11.30521 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.009242 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.022257 B = 3028.892365 C = 3369.000656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.028 0.972 4 C -0.112 4.112 5 C -0.071 4.071 6 H 0.101 0.899 7 C 0.481 3.519 8 O -0.525 6.525 9 O -0.518 6.518 10 C -0.132 4.132 11 C 0.172 3.828 12 N -0.589 5.589 13 C -0.249 4.249 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.905 5.905 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.279 1.279 21 H 0.063 0.937 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.400 0.600 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.094 0.906 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -0.471 -8.803 9.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.061 3.939 3 H 0.045 0.955 4 C -0.151 4.151 5 C -0.091 4.091 6 H 0.119 0.881 7 C 0.325 3.675 8 O -0.413 6.413 9 O -0.329 6.329 10 C -0.171 4.171 11 C 0.046 3.954 12 N -0.312 5.312 13 C -0.379 4.379 14 H 0.089 0.911 15 C -0.197 4.197 16 N -0.550 5.550 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.258 0.742 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.639 -0.351 -8.485 8.893 hybrid contribution -0.158 -0.804 0.066 0.822 sum 2.482 -1.155 -8.418 8.852 Atomic orbital electron populations 1.21790 0.95688 1.01515 1.00363 1.20448 0.93278 0.93503 0.86628 0.95487 1.22030 0.91484 1.02326 0.99285 1.21157 0.97936 0.99989 0.89973 0.88128 1.24181 0.79273 0.75703 0.88380 1.90658 1.57420 1.49185 1.44073 1.84613 1.27305 1.73868 1.47075 1.22327 1.00103 0.99317 0.95376 1.20814 0.83516 0.97313 0.93787 1.44169 1.02944 1.65066 1.19038 1.19217 0.94881 1.37578 0.86198 0.91127 1.25086 0.97892 0.99758 0.96958 1.69998 1.23462 1.44602 1.16890 0.86297 0.79879 0.79763 0.80876 1.21514 1.21803 1.20441 0.91837 0.94181 0.92735 0.91413 0.92321 0.74209 0.91895 0.92216 0.95973 0.88823 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.94 37.16 0.30 -2.28 16 2 C 0.17 3.46 3.50 -67.60 -0.24 3.22 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -2.05 3.95 -26.62 -0.11 -2.16 16 5 C -0.07 -1.23 2.59 -91.57 -0.24 -1.47 16 6 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 7 C 0.48 7.78 7.63 36.01 0.27 8.05 16 8 O -0.52 -9.70 16.74 -18.74 -0.31 -10.01 16 9 O -0.52 -6.71 13.31 -39.27 -0.52 -7.23 16 10 C -0.13 -2.48 5.33 -26.45 -0.14 -2.62 16 11 C 0.17 3.95 5.28 -3.71 -0.02 3.93 16 12 N -0.59 -14.29 2.99 -164.77 -0.49 -14.79 16 13 C -0.25 -6.61 8.60 -15.06 -0.13 -6.74 16 14 H 0.07 1.84 6.21 -52.49 -0.33 1.51 16 15 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 16 N -0.90 -25.67 11.14 55.49 0.62 -25.05 16 17 Si 0.90 21.45 29.58 -169.99 -5.03 16.43 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.06 1.28 7.62 -51.93 -0.40 0.88 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 1.05 7.44 -51.93 -0.39 0.67 16 24 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 25 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 26 H 0.40 3.26 9.10 45.56 0.41 3.68 16 27 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 254.59 15.07 3.84 3.84 Total: -1.00 -30.27 254.59 -5.81 -36.08 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.52 Total: 0.84 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.39 Total: -0.11 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.13 Total: -39.84 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.84 Total: -17.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.27 -5.81 -36.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235352029.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.715 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds