Wall clock time and date at job start Sun Mar 29 2020 21:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58505 * 2 1 4 4 C 1.53191 * 109.59123 * 239.56891 * 2 1 3 5 5 C 1.53032 * 109.31545 * 185.57707 * 4 2 1 6 6 H 1.08996 * 109.46528 * 301.34787 * 5 4 2 7 7 C 1.50701 * 109.45936 * 181.38392 * 5 4 2 8 8 O 1.20818 * 120.00257 * 0.02562 * 7 5 4 9 9 O 1.34235 * 119.99833 * 179.97438 * 7 5 4 10 10 C 1.53356 * 109.60725 * 61.37659 * 5 4 2 11 11 C 1.53196 * 109.14844 * 298.71187 * 10 5 4 12 12 N 1.46922 * 108.89273 * 54.57635 * 11 10 5 13 13 C 1.36935 * 120.63349 * 126.29888 * 12 11 10 14 14 H 1.07996 * 120.00217 * 209.06504 * 13 12 11 15 15 C 1.38821 * 119.99448 * 29.06501 * 13 12 11 16 16 N 1.31610 * 120.00207 * 15.04171 * 15 13 12 17 17 Si 1.86801 * 119.99409 * 195.04472 * 15 13 12 18 18 H 1.48498 * 109.47137 * 90.00076 * 17 15 13 19 19 H 1.48507 * 109.46760 * 209.99805 * 17 15 13 20 20 H 1.48502 * 109.47359 * 329.99565 * 17 15 13 21 21 H 1.08996 * 109.47274 * 299.72384 * 1 2 3 22 22 H 1.09003 * 109.47130 * 59.71835 * 1 2 3 23 23 H 1.09000 * 109.47253 * 179.71812 * 1 2 3 24 24 H 1.08995 * 109.49689 * 305.53459 * 4 2 1 25 25 H 1.09006 * 109.49390 * 65.62340 * 4 2 1 26 26 H 0.96697 * 116.99638 * 179.97438 * 9 7 5 27 27 H 1.08996 * 109.68985 * 178.74432 * 10 5 4 28 28 H 1.09001 * 109.47328 * 58.54917 * 10 5 4 29 29 H 1.09001 * 109.58358 * 294.72097 * 11 10 5 30 30 H 1.08997 * 109.58739 * 174.43558 * 11 10 5 31 31 H 0.97005 * 120.00134 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8494 -1.1689 6 1 4.0062 0.1459 -1.0994 7 6 4.0795 -1.5380 -2.4078 8 8 3.3054 -1.8967 -3.2633 9 8 5.3957 -1.7520 -2.5613 10 6 3.9595 -1.6673 0.0677 11 6 3.4650 -0.9452 1.3251 12 7 2.0225 -0.6980 1.1955 13 6 1.1535 -1.1107 2.1700 14 1 0.1361 -1.3662 1.9133 15 6 1.5805 -1.2006 3.4878 16 7 2.7029 -0.6208 3.8570 17 14 0.5619 -2.1445 4.7372 18 1 0.9975 -3.5640 4.7599 19 1 0.7516 -1.5469 6.0834 20 1 -0.8731 -2.0729 4.3615 21 1 -0.3633 0.5095 0.8924 22 1 -0.3633 0.5182 -0.8875 23 1 -0.3634 -1.0276 -0.0051 24 1 1.6030 -1.7269 -1.2891 25 1 1.7660 -0.1696 -2.1366 26 1 5.6764 -2.1976 -3.3723 27 1 5.0436 -1.7714 0.1106 28 1 3.5008 -2.6544 0.0109 29 1 3.9902 0.0039 1.4318 30 1 3.6519 -1.5668 2.2007 31 1 3.0010 -0.6833 4.7779 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235352029.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:21 Heat of formation + Delta-G solvation = -103.666706 kcal Electronic energy + Delta-G solvation = -14881.949863 eV Core-core repulsion = 12355.589855 eV Total energy + Delta-G solvation = -2526.360008 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45819 -39.19220 -37.08045 -35.02627 -33.72874 -31.86209 -28.24983 -27.25613 -25.05918 -23.02067 -21.86841 -20.74546 -18.97547 -18.30994 -17.51158 -16.94318 -16.57771 -15.72586 -15.47038 -15.00722 -14.64750 -14.40663 -14.09538 -13.33231 -12.96970 -12.76031 -12.69324 -12.60175 -12.50925 -12.32748 -12.05113 -11.97155 -11.69682 -11.52676 -11.24703 -11.08015 -10.49531 -8.61667 -7.82400 -5.27448 1.21364 1.48452 1.50295 1.57989 2.17251 2.54052 3.33314 3.62852 3.79399 3.92005 4.16831 4.35309 4.49915 4.59398 4.76632 4.78505 4.89380 4.96520 5.02822 5.16186 5.20532 5.41198 5.49325 5.55812 5.63919 5.74606 5.77832 6.45909 7.04407 7.20734 7.91857 8.43041 9.24519 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.009242 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.022257 B = 3028.892365 C = 3369.000656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.160 3.840 3 H 0.027 0.973 4 C -0.101 4.101 5 C -0.072 4.072 6 H 0.115 0.885 7 C 0.495 3.505 8 O -0.549 6.549 9 O -0.508 6.508 10 C -0.116 4.116 11 C 0.176 3.824 12 N -0.607 5.607 13 C -0.251 4.251 14 H 0.073 0.927 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.960 3.040 18 H -0.289 1.289 19 H -0.297 1.297 20 H -0.270 1.270 21 H 0.044 0.956 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.425 0.575 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.008 0.992 30 H 0.060 0.940 31 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -0.661 -10.315 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 H 0.045 0.955 4 C -0.140 4.140 5 C -0.091 4.091 6 H 0.133 0.867 7 C 0.339 3.661 8 O -0.439 6.439 9 O -0.321 6.321 10 C -0.156 4.156 11 C 0.050 3.950 12 N -0.331 5.331 13 C -0.381 4.381 14 H 0.090 0.910 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.789 3.211 18 H -0.216 1.216 19 H -0.224 1.224 20 H -0.194 1.194 21 H 0.064 0.936 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.287 0.713 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.713 -0.549 -10.037 10.412 hybrid contribution -0.127 -0.716 0.472 0.867 sum 2.585 -1.265 -9.565 9.989 Atomic orbital electron populations 1.21727 0.94581 1.01273 1.01151 1.20664 0.94376 0.93372 0.86124 0.95505 1.21842 0.92232 1.01328 0.98596 1.21045 0.97441 1.00672 0.89919 0.86695 1.23634 0.80026 0.75038 0.87416 1.90665 1.58310 1.50173 1.44801 1.84535 1.25217 1.73691 1.48687 1.22065 1.01111 0.98276 0.94104 1.20619 0.83298 0.96374 0.94697 1.44449 1.03154 1.65795 1.19702 1.19506 0.95267 1.36493 0.86824 0.90973 1.25762 0.99138 1.01101 0.98682 1.70142 1.25013 1.46266 1.16766 0.85366 0.79002 0.78245 0.78450 1.21566 1.22365 1.19449 0.93649 0.90749 0.93465 0.92874 0.90319 0.71329 0.89780 0.93222 0.97416 0.92173 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.94 71.98 0.57 -4.18 16 2 C 0.16 6.41 3.50 44.97 0.16 6.57 16 3 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 4 C -0.10 -3.49 3.95 30.67 0.12 -3.37 16 5 C -0.07 -2.30 2.59 -11.41 -0.03 -2.33 16 6 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 7 C 0.49 14.48 7.63 71.24 0.54 15.02 16 8 O -0.55 -18.75 16.74 21.99 0.37 -18.38 16 9 O -0.51 -11.27 13.31 -51.46 -0.68 -11.95 16 10 C -0.12 -4.22 5.33 30.78 0.16 -4.06 16 11 C 0.18 8.17 5.28 86.36 0.46 8.63 16 12 N -0.61 -29.52 2.99 -675.21 -2.02 -31.54 16 13 C -0.25 -13.38 8.60 84.04 0.72 -12.66 16 14 H 0.07 3.76 6.21 -2.91 -0.02 3.74 16 15 C -0.05 -2.85 4.96 84.87 0.42 -2.43 16 16 N -0.94 -54.30 11.14 21.65 0.24 -54.06 16 17 Si 0.96 44.62 29.58 68.60 2.03 46.65 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H 0.04 1.79 7.62 -2.39 -0.02 1.77 16 22 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.05 1.77 7.44 -2.39 -0.02 1.75 16 24 H 0.05 2.00 8.13 -2.39 -0.02 1.98 16 25 H 0.08 2.42 8.07 -2.38 -0.02 2.40 16 26 H 0.43 5.22 9.10 -74.06 -0.67 4.54 16 27 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 3.20 6.06 -2.39 -0.01 3.18 16 31 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -64.54 254.59 3.51 -61.02 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.45 Total: 7.06 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 3.13 Total: 1.20 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.78 Total: -85.60 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.32 Total: -30.33 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.54 3.51 -61.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235352029.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.644 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds