Wall clock time and date at job start Sun Mar 29 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.36869 * 2 1 4 4 C 1.54380 * 110.32394 * 122.17890 * 2 1 3 5 5 N 1.48562 * 104.59484 * 142.75318 * 4 2 1 6 6 C 1.46901 * 110.99845 * 200.96022 * 5 4 2 7 7 C 1.50703 * 109.46936 * 185.28721 * 6 5 4 8 8 H 1.07998 * 120.00303 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00033 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99525 * 0.02562 * 9 7 6 11 11 Si 1.86788 * 120.00105 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47209 * 60.00057 * 11 9 7 13 13 H 1.48503 * 109.47406 * 300.00009 * 11 9 7 14 14 H 1.48497 * 109.47397 * 180.02562 * 11 9 7 15 15 C 1.48567 * 104.21808 * 320.51476 * 5 4 2 16 16 C 1.54255 * 110.32655 * 237.81647 * 2 1 3 17 17 H 1.09002 * 110.32433 * 122.20774 * 16 2 1 18 18 C 1.50707 * 110.32232 * 0.02562 * 16 2 1 19 19 O 1.20822 * 119.99710 * 274.89781 * 18 16 2 20 20 O 1.34226 * 119.99896 * 94.89657 * 18 16 2 21 21 H 1.08999 * 109.47131 * 183.60795 * 1 2 3 22 22 H 1.09005 * 109.47115 * 303.60662 * 1 2 3 23 23 H 1.08998 * 109.47329 * 63.60931 * 1 2 3 24 24 H 1.08993 * 110.41414 * 23.96827 * 4 2 1 25 25 H 1.09004 * 110.41038 * 261.52558 * 4 2 1 26 26 H 1.08999 * 109.47401 * 65.29090 * 6 5 4 27 27 H 1.08999 * 109.47549 * 305.28979 * 6 5 4 28 28 H 0.96998 * 120.00645 * 0.02562 * 10 9 7 29 29 H 1.09002 * 110.40732 * 158.26524 * 15 5 4 30 30 H 1.09002 * 110.41248 * 280.70477 * 15 5 4 31 31 H 0.96699 * 116.99910 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 1.2253 5 7 3.2694 -1.4827 0.7226 6 6 3.6069 -2.6216 1.5870 7 6 4.9012 -3.2383 1.1228 8 1 5.4213 -2.8253 0.2712 9 6 5.4220 -4.3292 1.7860 10 7 4.7889 -4.8317 2.8234 11 14 7.0266 -5.0931 1.2111 12 1 8.1102 -4.0800 1.2809 13 1 6.8775 -5.5627 -0.1898 14 1 7.3678 -6.2444 2.0848 15 6 2.8806 -1.9421 -0.6357 16 6 2.0658 -0.7704 -1.2242 17 1 2.7082 -0.1268 -1.8252 18 6 0.9224 -1.2928 -2.0555 19 8 0.4054 -2.3485 -1.7761 20 8 0.4783 -0.5852 -3.1061 21 1 -0.3633 -1.0256 0.0647 22 1 -0.3633 0.5688 0.8559 23 1 -0.3634 0.4568 -0.9205 24 1 1.3229 -1.4847 1.5805 25 1 2.3394 -0.0778 2.0209 26 1 2.8113 -3.3649 1.5357 27 1 3.7167 -2.2773 2.6153 28 1 3.9554 -4.4353 3.1217 29 1 3.7671 -2.1308 -1.2414 30 1 2.2648 -2.8393 -0.5719 31 1 -0.2574 -0.9607 -3.6088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251879906.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:55 Heat of formation + Delta-G solvation = -98.375496 kcal Electronic energy + Delta-G solvation = -14636.995232 eV Core-core repulsion = 12110.864668 eV Total energy + Delta-G solvation = -2526.130564 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65457 -38.12789 -35.98630 -33.91664 -31.99471 -29.85127 -27.03244 -24.93696 -23.75157 -21.90553 -20.54936 -19.42481 -17.99110 -16.73711 -16.47603 -15.98667 -15.12069 -14.37999 -13.82383 -13.67903 -13.23570 -12.86798 -12.59772 -12.35329 -12.18227 -11.47005 -11.21137 -11.17880 -11.11277 -10.73052 -10.69660 -10.51505 -10.30652 -10.20240 -10.05072 -8.66838 -8.37365 -7.57288 -6.36677 -4.05615 2.28475 3.07547 3.45635 3.48012 3.66567 4.52736 4.67459 4.72011 4.81853 5.19405 5.32595 5.40601 5.50319 5.57025 5.62500 5.77083 5.91963 6.05697 6.20466 6.33841 6.35719 6.46122 6.56086 6.87312 7.00570 7.58909 7.83908 7.97019 8.24452 8.56051 8.86243 9.65315 11.02866 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045149 B = 0.007793 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.020338 B = 3592.311743 C = 3880.769515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.078 4.078 3 H 0.090 0.910 4 C 0.031 3.969 5 N -0.498 5.498 6 C 0.172 3.828 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.014 3.986 10 N -0.913 5.913 11 Si 1.073 2.927 12 H -0.287 1.287 13 H -0.288 1.288 14 H -0.283 1.283 15 C 0.057 3.943 16 C -0.089 4.089 17 H 0.107 0.893 18 C 0.491 3.509 19 O -0.512 6.512 20 O -0.520 6.520 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.078 0.922 26 H -0.014 1.014 27 H 0.023 0.977 28 H 0.267 0.733 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 9.792 -8.648 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.097 4.097 3 H 0.109 0.891 4 C -0.098 4.098 5 N -0.222 5.222 6 C 0.046 3.954 7 C -0.628 4.628 8 H 0.075 0.925 9 C -0.190 4.190 10 N -0.550 5.550 11 Si 0.901 3.099 12 H -0.213 1.213 13 H -0.215 1.215 14 H -0.208 1.208 15 C -0.071 4.071 16 C -0.109 4.109 17 H 0.126 0.874 18 C 0.333 3.667 19 O -0.399 6.399 20 O -0.331 6.331 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.004 0.996 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.173 8.772 -8.008 13.386 hybrid contribution -2.363 0.446 -0.625 2.485 sum -8.537 9.218 -8.633 15.244 Atomic orbital electron populations 1.22113 0.94957 1.02719 1.02063 1.21830 0.95215 0.99663 0.92988 0.89120 1.23211 0.92945 0.97417 0.96204 1.65489 1.29076 1.25920 1.01718 1.20007 0.96472 0.86447 0.92468 1.21933 1.07469 1.15956 1.17461 0.92487 1.25874 1.03802 0.94814 0.94491 1.70792 1.17567 1.42106 1.24499 0.83482 0.74634 0.76187 0.75585 1.21322 1.21473 1.20807 1.22953 0.97875 0.93865 0.92413 1.22004 0.93216 1.00261 0.95436 0.87449 1.23421 0.83513 0.81819 0.77928 1.90716 1.57228 1.23260 1.68688 1.84586 1.52591 1.53880 1.42081 0.91884 0.91685 0.92416 0.94168 0.90382 0.99620 0.95878 0.92325 0.89534 0.92335 0.73801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 7.96 37.16 0.30 -1.76 16 2 C -0.08 -1.13 3.65 -89.24 -0.33 -1.45 16 3 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.55 6.03 -2.18 -0.01 0.54 16 5 N -0.50 -10.98 5.36 -231.40 -1.24 -12.22 16 6 C 0.17 4.56 3.88 -4.97 -0.02 4.55 16 7 C -0.59 -17.04 8.82 -34.44 -0.30 -17.34 16 8 H 0.06 1.63 7.61 -52.49 -0.40 1.23 16 9 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 10 N -0.91 -28.29 13.65 55.43 0.76 -27.53 16 11 Si 1.07 25.64 29.90 -169.99 -5.08 20.56 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.06 1.15 5.46 -2.18 -0.01 1.14 16 16 C -0.09 -1.38 3.55 -90.39 -0.32 -1.70 16 17 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 18 C 0.49 7.31 5.24 36.01 0.19 7.50 16 19 O -0.51 -9.30 15.67 -18.75 -0.29 -9.60 16 20 O -0.52 -5.79 13.15 -39.25 -0.52 -6.31 16 21 H 0.06 0.93 6.95 -51.93 -0.36 0.57 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.66 7.26 -51.93 -0.38 0.28 16 24 H 0.04 0.76 7.66 -51.93 -0.40 0.36 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 26 H -0.01 -0.39 7.75 -51.93 -0.40 -0.79 16 27 H 0.02 0.64 8.00 -51.93 -0.42 0.23 16 28 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 29 H 0.09 1.76 7.94 -51.93 -0.41 1.35 16 30 H 0.06 1.32 6.59 -51.93 -0.34 0.97 16 31 H 0.40 2.73 9.10 45.56 0.41 3.15 16 LS Contribution 257.76 15.07 3.88 3.88 Total: -1.00 -33.28 257.76 -6.57 -39.85 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.47 Total: -0.42 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.61 Total: -8.23 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.48 Total: -39.75 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.81 Total: -15.91 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.28 -6.57 -39.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251879906.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.521 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds